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    Tmem109 transmembrane protein 109 [ Mus musculus (house mouse) ]

    Gene ID: 68539, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tmem109provided by MGI
    Official Full Name
    transmembrane protein 109provided by MGI
    Primary source
    MGI:MGI:1915789
    See related
    Ensembl:ENSMUSG00000034659
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C77652; AA958958; 1110006I15Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 107.7), lung adult (RPKM 86.9) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Tmem109 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10848021..10859107, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10870657..10881743, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (10945150..10956233, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene CD6 antigen Neighboring gene solute carrier family 15, member 3 Neighboring gene transmembrane protein 132A Neighboring gene pre-mRNA processing factor 19 Neighboring gene zona pellucida glycoprotein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables voltage-gated ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sarcoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    transmembrane protein 109
    Names
    mg23
    mitsugumin-23
    mitsugumin23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134142.1NP_598903.1  transmembrane protein 109 precursor

      See identical proteins and their annotated locations for NP_598903.1

      Status: PROVISIONAL

      Source sequence(s)
      BC022997
      Consensus CDS
      CCDS29590.1
      UniProtKB/Swiss-Prot
      Q3UBX0
      Related
      ENSMUSP00000039529.9, ENSMUST00000038128.15
      Conserved Domains (1) summary
      pfam14965
      Location:57231
      BRI3BP; Negative regulator of p53/TP53

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      10848021..10859107 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527317.1XP_006527380.1  transmembrane protein 109 isoform X1

      See identical proteins and their annotated locations for XP_006527380.1

      UniProtKB/Swiss-Prot
      Q3UBX0
      Related
      ENSMUSP00000120261.2, ENSMUST00000133303.8
      Conserved Domains (1) summary
      pfam14965
      Location:57231
      BRI3BP; Negative regulator of p53/TP53
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