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    Zbtb40 zinc finger and BTB domain containing 40 [ Mus musculus (house mouse) ]

    Gene ID: 230848, updated on 28-Sep-2021

    Summary

    Official Symbol
    Zbtb40provided by MGI
    Official Full Name
    zinc finger and BTB domain containing 40provided by MGI
    Primary source
    MGI:MGI:2682254
    See related
    Ensembl:ENSMUSG00000060862
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm571; BC059177; mKIAA0478; C230087D24
    Expression
    Ubiquitous expression in thymus adult (RPKM 3.9), ovary adult (RPKM 3.5) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Zbtb40 in Genome Data Viewer
    Location:
    4; 4 D3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (136707043..136776129, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (136979732..137048820, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (136535647..136604610, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene complement component 1, q subcomponent, alpha polypeptide Neighboring gene Eph receptor A8 Neighboring gene predicted gene, 23834 Neighboring gene predicted gene, 31648 Neighboring gene predicted gene 13001

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC62412

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    zinc finger and BTB domain-containing protein 40

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198248.1NP_937891.1  zinc finger and BTB domain-containing protein 40

      See identical proteins and their annotated locations for NP_937891.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059177
      Consensus CDS
      CCDS18814.1
      UniProtKB/TrEMBL
      Q6PCS8
      Related
      ENSMUSP00000061899.8, ENSMUST00000049583.8
      Conserved Domains (7) summary
      smart00225
      Location:25113
      BTB; Broad-Complex, Tramtrack and Bric a brac
      COG5048
      Location:8721078
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:856876
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:971989
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:9971019
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:19113
      BTB; BTB/POZ domain
      pfam13465
      Location:925950
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      136707043..136776129 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538763.5XP_006538826.1  zinc finger and BTB domain-containing protein 40 isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:8721077
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:856876
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:970988
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18225
      Location:1116
      BTB_POZ_ZBTB40; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 40 (ZBTB40)
    2. XM_006538764.5XP_006538827.1  zinc finger and BTB domain-containing protein 40 isoform X2

      Conserved Domains (4) summary
      sd00017
      Location:827848
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:854876
      zf-C2H2; Zinc finger, C2H2 type
      cd18225
      Location:1116
      BTB_POZ_ZBTB40; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 40 (ZBTB40)
      pfam13465
      Location:869893
      zf-H2C2_2; Zinc-finger double domain
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