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    Ccdc86 coiled-coil domain containing 86 [ Mus musculus (house mouse) ]

    Gene ID: 108673, updated on 16-Oct-2021

    Summary

    Official Symbol
    Ccdc86provided by MGI
    Official Full Name
    coiled-coil domain containing 86provided by MGI
    Primary source
    MGI:MGI:1277220
    See related
    Ensembl:ENSMUSG00000024732
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D19Ertd678e; 4933411H20Rik; 6720480F16Rik
    Expression
    Ubiquitous expression in adrenal adult (RPKM 9.3), testis adult (RPKM 6.9) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ccdc86 in Genome Data Viewer
    Location:
    19 A; 19 7.41 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10918845..10926630, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10941481..10949266, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11015971..11023756, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene pre-mRNA processing factor 19 Neighboring gene zona pellucida glycoprotein 1 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene membrane-spanning 4-domains, subfamily A, member 10 Neighboring gene membrane-spanning 4-domains, subfamily A, member 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 86
    Names
    cyclon
    cytokine-induced protein with coiled-coil domain
    mCyclon

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023731.3NP_076220.2  coiled-coil domain-containing protein 86

      See identical proteins and their annotated locations for NP_076220.2

      Status: VALIDATED

      Source sequence(s)
      AC148991, AK036812, AK078455
      Consensus CDS
      CCDS29593.1
      UniProtKB/Swiss-Prot
      Q9JJ89
      Related
      ENSMUSP00000025639.7, ENSMUST00000025639.7
      Conserved Domains (1) summary
      pfam03879
      Location:302388
      Cgr1; Cgr1 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      10918845..10926630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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