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    Lmo3 LIM domain only 3 [ Mus musculus (house mouse) ]

    Gene ID: 109593, updated on 20-Jul-2021

    Summary

    Official Symbol
    Lmo3provided by MGI
    Official Full Name
    LIM domain only 3provided by MGI
    Primary source
    MGI:MGI:102810
    See related
    Ensembl:ENSMUSG00000030226
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rbt; Rbtn; Lmo-3; Rbtn3; Rbtn-3; AI854781; BB106490
    Expression
    Biased expression in CNS E18 (RPKM 16.5), frontal lobe adult (RPKM 10.9) and 4 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Lmo3 in Genome Data Viewer
    Location:
    6 G1; 6 69.02 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (138339916..138559204, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (138362918..138582206, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (138313002..138530489, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene predicted gene, 30213 Neighboring gene RIKEN cDNA A830011K09 gene Neighboring gene predicted gene, 30332 Neighboring gene RIKEN cDNA B230110G15 gene Neighboring gene immunoglobulin (CD79A) binding protein 1b Neighboring gene protein inhibitor of activated STAT 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    LIM domain only protein 3
    Names
    LIM only 3
    neuronal-specific transcription factor DAT1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356305.1NP_001343234.1  LIM domain only protein 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC121968, AC125215
      Consensus CDS
      CCDS20669.1
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    2. NM_001356306.1NP_001343235.1  LIM domain only protein 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC121968, AC125215
      Consensus CDS
      CCDS20669.1
      Related
      ENSMUSP00000125589.2, ENSMUST00000163024.8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    3. NM_001356307.1NP_001343236.1  LIM domain only protein 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC121968, AC125215
      Consensus CDS
      CCDS90132.1
      Related
      ENSMUSP00000124762.2, ENSMUST00000163065.8
      Conserved Domains (2) summary
      cd09388
      Location:2478
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:88142
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    4. NM_207222.3NP_997105.1  LIM domain only protein 3 isoform 1

      See identical proteins and their annotated locations for NP_997105.1

      Status: VALIDATED

      Source sequence(s)
      AC121968, AC125215, AC139755
      Consensus CDS
      CCDS20669.1
      UniProtKB/Swiss-Prot
      Q8BZL8
      Related
      ENSMUSP00000125335.2, ENSMUST00000162772.8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

    RNA

    1. NR_151448.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC121968, AC125215
    2. NR_151449.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC121968, AC125215

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      138339916..138559204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030255087.1XP_030110947.1  LIM domain only protein 3 isoform X2

      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    2. XM_011241131.2XP_011239433.1  LIM domain only protein 3 isoform X2

      See identical proteins and their annotated locations for XP_011239433.1

      UniProtKB/Swiss-Prot
      Q8BZL8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    3. XM_006505341.4XP_006505404.1  LIM domain only protein 3 isoform X2

      See identical proteins and their annotated locations for XP_006505404.1

      UniProtKB/Swiss-Prot
      Q8BZL8
      Related
      ENSMUSP00000145048.2, ENSMUST00000203435.3
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    4. XM_011241132.4XP_011239434.1  LIM domain only protein 3 isoform X2

      See identical proteins and their annotated locations for XP_011239434.1

      UniProtKB/Swiss-Prot
      Q8BZL8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    5. XM_017321313.3XP_017176802.1  LIM domain only protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q8BZL8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    6. XM_006505340.3XP_006505403.1  LIM domain only protein 3 isoform X2

      See identical proteins and their annotated locations for XP_006505403.1

      UniProtKB/Swiss-Prot
      Q8BZL8
      Related
      ENSMUSP00000124862.2, ENSMUST00000161450.8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    7. XM_011241133.4XP_011239435.1  LIM domain only protein 3 isoform X2

      See identical proteins and their annotated locations for XP_011239435.1

      UniProtKB/Swiss-Prot
      Q8BZL8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    8. XM_036165744.1XP_036021637.1  LIM domain only protein 3 isoform X2

      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    9. XM_036165743.1XP_036021636.1  LIM domain only protein 3 isoform X1

      Conserved Domains (2) summary
      cd09388
      Location:4094
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:104158
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    10. XM_006505342.2XP_006505405.1  LIM domain only protein 3 isoform X2

      See identical proteins and their annotated locations for XP_006505405.1

      UniProtKB/Swiss-Prot
      Q8BZL8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:77131
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    11. XM_006505343.5XP_006505406.1  LIM domain only protein 3 isoform X3

      Conserved Domains (2) summary
      cd09388
      Location:4094
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cl02475
      Location:104139
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    RNA

    1. XR_377405.5 RNA Sequence

    2. XR_868844.4 RNA Sequence

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