Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Stra6l STRA6-like [ Mus musculus (house mouse) ]

    Gene ID: 74152, updated on 23-Jun-2021

    Summary

    Official Symbol
    Stra6lprovided by MGI
    Official Full Name
    STRA6-likeprovided by MGI
    Primary source
    MGI:MGI:1921402
    See related
    Ensembl:ENSMUSG00000028327
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rb; Rbpr2; 1300002K09Rik
    Expression
    Biased expression in liver adult (RPKM 35.2), liver E18 (RPKM 4.8) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Stra6l in Genome Data Viewer
    Location:
    4; 4 B1
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (45818940..45887010)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (45824293..45887010)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (45861819..45899880)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12409 Neighboring gene aldehyde dehydrogenase 1 family, member B1 Neighboring gene insulin-like growth factor binding protein-like 1 Neighboring gene coiled-coil domain containing 180 Neighboring gene tudor domain containing 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Homology

    Clone Names

    • MGC132877, MGC132878

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within retinol transport IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in vitamin A import IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within vitamin A import IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    stimulated by retinoic acid gene 6 protein-like
    Names
    RBP4 receptor 2
    STRA6-like protein
    retinol-binding protein 4 receptor 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305421.1NP_001292350.1  stimulated by retinoic acid gene 6 protein-like isoform 2

      See identical proteins and their annotated locations for NP_001292350.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks an alternate exon in the 5' coding region, and uses a downstream start codon compared to variant 1. It encodes isoform 2, which has a shorter N-terminus than isoform 1.
      Source sequence(s)
      AK004855, AK045033, AK050152, AL772381
      Consensus CDS
      CCDS80094.1
      UniProtKB/Swiss-Prot
      Q9DBN1
      Related
      ENSMUSP00000103411.2, ENSMUST00000107782.8
      Conserved Domains (1) summary
      pfam14752
      Location:1511
      RBP_receptor; Retinol binding protein receptor
    2. NM_028788.4NP_083064.2  stimulated by retinoic acid gene 6 protein-like isoform 1

      See identical proteins and their annotated locations for NP_083064.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform.
      Source sequence(s)
      AK050152, AK050348, AL772381, BY776586
      Consensus CDS
      CCDS18141.1
      UniProtKB/Swiss-Prot
      Q9DBN1
      Related
      ENSMUSP00000030011.6, ENSMUST00000030011.6
      Conserved Domains (1) summary
      pfam14752
      Location:14602
      RBP_receptor; Retinol binding protein receptor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      45818940..45887010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538310.5XP_006538373.1  stimulated by retinoic acid gene 6 protein-like isoform X1

      See identical proteins and their annotated locations for XP_006538373.1

      Conserved Domains (1) summary
      pfam14752
      Location:93681
      RBP_receptor; Retinol binding protein receptor
    2. XM_036164494.1XP_036020387.1  stimulated by retinoic acid gene 6 protein-like isoform X2

      Conserved Domains (1) summary
      pfam14752
      Location:14602
      RBP_receptor; Retinol binding protein receptor
    3. XM_006538312.2XP_006538375.1  stimulated by retinoic acid gene 6 protein-like isoform X2

      See identical proteins and their annotated locations for XP_006538375.1

      UniProtKB/Swiss-Prot
      Q9DBN1
      Related
      ENSMUSP00000103412.2, ENSMUST00000107783.8
      Conserved Domains (1) summary
      pfam14752
      Location:14602
      RBP_receptor; Retinol binding protein receptor
    4. XM_006538311.3XP_006538374.1  stimulated by retinoic acid gene 6 protein-like isoform X1

      See identical proteins and their annotated locations for XP_006538374.1

      Conserved Domains (1) summary
      pfam14752
      Location:93681
      RBP_receptor; Retinol binding protein receptor
    5. XM_006538313.2XP_006538376.1  stimulated by retinoic acid gene 6 protein-like isoform X3

      See identical proteins and their annotated locations for XP_006538376.1

      UniProtKB/Swiss-Prot
      Q9DBN1
      Conserved Domains (1) summary
      pfam14752
      Location:1511
      RBP_receptor; Retinol binding protein receptor
    6. XM_006538315.2XP_006538378.1  stimulated by retinoic acid gene 6 protein-like isoform X3

      See identical proteins and their annotated locations for XP_006538378.1

      UniProtKB/Swiss-Prot
      Q9DBN1
      Conserved Domains (1) summary
      pfam14752
      Location:1511
      RBP_receptor; Retinol binding protein receptor
    7. XM_006538314.3XP_006538377.1  stimulated by retinoic acid gene 6 protein-like isoform X3

      See identical proteins and their annotated locations for XP_006538377.1

      UniProtKB/Swiss-Prot
      Q9DBN1
      Conserved Domains (1) summary
      pfam14752
      Location:1511
      RBP_receptor; Retinol binding protein receptor
    8. XM_006538317.4XP_006538380.1  stimulated by retinoic acid gene 6 protein-like isoform X4

      Conserved Domains (1) summary
      pfam14752
      Location:1410
      RBP_receptor; Retinol binding protein receptor
    Support Center