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    Slc46a2 solute carrier family 46, member 2 [ Mus musculus (house mouse) ]

    Gene ID: 30936, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slc46a2provided by MGI
    Official Full Name
    solute carrier family 46, member 2provided by MGI
    Primary source
    MGI:MGI:1353616
    See related
    Ensembl:ENSMUSG00000028386
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tsc; Ly11; Ly110; Tscot; TSO-1C; TSO-1C12; 5430429N04Rik
    Expression
    Biased expression in thymus adult (RPKM 10.5), genital fat pad adult (RPKM 6.6) and 3 other tissues See more
    Orthologs
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    Genomic context

    See Slc46a2 in Genome Data Viewer
    Location:
    4 B3; 4 32.81 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59905899..59915056, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59905899..59915056, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (59918771..59927928, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene INTS3 and NABP interacting protein Neighboring gene sorting nexin family member 30 Neighboring gene sorting nexin 2 pseudogene Neighboring gene major urinary protein 4 Neighboring gene major urinary protein 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    thymic stromal cotransporter protein
    Names
    putative thymic stromal co-transporter TSCOT

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021053.4NP_066395.3  thymic stromal cotransporter protein

      See identical proteins and their annotated locations for NP_066395.3

      Status: VALIDATED

      Source sequence(s)
      AK040063, AL831738
      Consensus CDS
      CCDS18227.1
      UniProtKB/Swiss-Prot
      Q8CA03
      Related
      ENSMUSP00000030081.2, ENSMUST00000030081.2
      Conserved Domains (2) summary
      cd06174
      Location:86455
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:88422
      MFS_1; Major Facilitator Superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      59905899..59915056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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