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    Fndc3b fibronectin type III domain containing 3B [ Mus musculus (house mouse) ]

    Gene ID: 72007, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fndc3bprovided by MGI
    Official Full Name
    fibronectin type III domain containing 3Bprovided by MGI
    Primary source
    MGI:MGI:1919257
    See related
    Ensembl:ENSMUSG00000039286
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    fad10; Fad104; AW550168; mKIAA4164; 1600019O04Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 16.1), limb E14.5 (RPKM 9.8) and 27 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fndc3b in Genome Data Viewer
    Location:
    3; 3 A3
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (27470284..27765469, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (27416135..27711307, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (27315084..27609361, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor (ligand) superfamily, member 10 Neighboring gene growth hormone secretagogue receptor Neighboring gene predicted gene, 32738 Neighboring gene microRNA 3092 Neighboring gene predicted gene, 42194 Neighboring gene predicted gene, 32795 Neighboring gene transmembrane protein 212 Neighboring gene predicted gene, 26040

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA4164

    General protein information

    Preferred Names
    fibronectin type III domain-containing protein 3B
    Names
    HCV NS5A-binding protein 37
    factor for adipocyte differentiation 104

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356953.1NP_001343882.1  fibronectin type III domain-containing protein 3B

      Status: VALIDATED

      Source sequence(s)
      AC116585, AC118696, AC140372, AK147346
      Consensus CDS
      CCDS17274.1
      Related
      ENSMUSP00000141620.2, ENSMUST00000195008.6
      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    2. NM_173182.3NP_775274.2  fibronectin type III domain-containing protein 3B

      See identical proteins and their annotated locations for NP_775274.2

      Status: VALIDATED

      Source sequence(s)
      AC140372, AK220297, AW491305
      Consensus CDS
      CCDS17274.1
      UniProtKB/Swiss-Prot
      Q6NWW9
      UniProtKB/TrEMBL
      A0A0R4J0H8
      Related
      ENSMUSP00000041495.5, ENSMUST00000046157.10
      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      27470284..27765469 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535547.5XP_006535610.1  fibronectin type III domain-containing protein 3B isoform X4

      Conserved Domains (2) summary
      cd00063
      Location:575690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:803875
      fn3; Fibronectin type III domain
    2. XM_006535541.5XP_006535604.1  fibronectin type III domain-containing protein 3B isoform X1

      See identical proteins and their annotated locations for XP_006535604.1

      UniProtKB/Swiss-Prot
      Q6NWW9
      UniProtKB/TrEMBL
      A0A0R4J0H8
      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    3. XM_036163344.1XP_036019237.1  fibronectin type III domain-containing protein 3B isoform X2

      Conserved Domains (2) summary
      cd00063
      Location:673747
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:860932
      fn3; Fibronectin type III domain
    4. XM_011249712.4XP_011248014.1  fibronectin type III domain-containing protein 3B isoform X1

      See identical proteins and their annotated locations for XP_011248014.1

      UniProtKB/Swiss-Prot
      Q6NWW9
      UniProtKB/TrEMBL
      A0A0R4J0H8
      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    5. XM_036163342.1XP_036019235.1  fibronectin type III domain-containing protein 3B isoform X1

      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    6. XM_006535544.5XP_006535607.1  fibronectin type III domain-containing protein 3B isoform X1

      See identical proteins and their annotated locations for XP_006535607.1

      UniProtKB/Swiss-Prot
      Q6NWW9
      UniProtKB/TrEMBL
      A0A0R4J0H8
      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    7. XM_036163347.1XP_036019240.1  fibronectin type III domain-containing protein 3B isoform X5

      Conserved Domains (2) summary
      cd00063
      Location:557672
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:785857
      fn3; Fibronectin type III domain
    8. XM_036163345.1XP_036019238.1  fibronectin type III domain-containing protein 3B isoform X2

      Conserved Domains (2) summary
      cd00063
      Location:673747
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:860932
      fn3; Fibronectin type III domain
    9. XM_036163346.1XP_036019239.1  fibronectin type III domain-containing protein 3B isoform X4

      Conserved Domains (2) summary
      cd00063
      Location:575690
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:803875
      fn3; Fibronectin type III domain
    10. XM_030252836.2XP_030108696.1  fibronectin type III domain-containing protein 3B isoform X1

      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    11. XM_017319738.3XP_017175227.1  fibronectin type III domain-containing protein 3B isoform X1

      UniProtKB/Swiss-Prot
      Q6NWW9
      UniProtKB/TrEMBL
      A0A0R4J0H8
      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    12. XM_036163341.1XP_036019234.1  fibronectin type III domain-containing protein 3B isoform X1

      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    13. XM_011249711.3XP_011248013.1  fibronectin type III domain-containing protein 3B isoform X1

      See identical proteins and their annotated locations for XP_011248013.1

      UniProtKB/Swiss-Prot
      Q6NWW9
      UniProtKB/TrEMBL
      A0A0R4J0H8
      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    14. XM_036163343.1XP_036019236.1  fibronectin type III domain-containing protein 3B isoform X1

      Conserved Domains (2) summary
      cd00063
      Location:691765
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:878950
      fn3; Fibronectin type III domain
    15. XM_006535546.4XP_006535609.1  fibronectin type III domain-containing protein 3B isoform X3

      Conserved Domains (2) summary
      cd00063
      Location:623697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:821881
      fn3; Fibronectin type III domain
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