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    6720489N17Rik RIKEN cDNA 6720489N17 gene [ Mus musculus (house mouse) ]

    Gene ID: 211378, updated on 23-Jun-2021

    Summary

    Official Symbol
    6720489N17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6720489N17 geneprovided by MGI
    Primary source
    MGI:MGI:2443901
    See related
    Ensembl:ENSMUSG00000072066
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9330128I06
    Expression
    Broad expression in whole brain E14.5 (RPKM 1.6), CNS E14 (RPKM 1.5) and 16 other tissues See more
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    Genomic context

    See 6720489N17Rik in Genome Data Viewer
    Location:
    13; 13 B3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62747134..62783726, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62598066..62638257, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (62704375..62725545, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 934 Neighboring gene predicted gene, 24095 Neighboring gene predicted gene, 38639 Neighboring gene predicted gene, 36298 Neighboring gene pluripotency associated transcript 25 Neighboring gene calcium binding and coiled-coil domain 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC211378

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001324406.1NP_001311335.1  uncharacterized protein LOC211378 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CT030240
    2. NM_173381.1NP_775557.1  uncharacterized protein LOC211378 isoform 1

      See identical proteins and their annotated locations for NP_775557.1

      Status: VALIDATED

      Source sequence(s)
      AK033001, AK033958
      Consensus CDS
      CCDS79202.1
      UniProtKB/TrEMBL
      Q8BGU1
      Related
      ENSMUSP00000144207.2, ENSMUST00000201563.4
      Conserved Domains (2) summary
      smart00349
      Location:444
      KRAB; krueppel associated box
      pfam01352
      Location:443
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      62747134..62783726 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315473.3XP_017170962.1  uncharacterized protein LOC211378 isoform X1

      Conserved Domains (1) summary
      pfam01352
      Location:2060
      KRAB; KRAB box
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