Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Snx20 sorting nexin 20 [ Mus musculus (house mouse) ]

    Gene ID: 71607, updated on 23-Jun-2021

    Summary

    Official Symbol
    Snx20provided by MGI
    Official Full Name
    sorting nexin 20provided by MGI
    Primary source
    MGI:MGI:1918857
    See related
    Ensembl:ENSMUSG00000031662
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9130017C17Rik
    Expression
    Biased expression in duodenum adult (RPKM 85.3), small intestine adult (RPKM 59.2) and 7 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Snx20 in Genome Data Viewer
    Location:
    8; 8 C3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (89353189..89362769, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (88626561..88636133, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (91150727..91160027, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35162 Neighboring gene naked cuticle 1 Neighboring gene nucleotide-binding oligomerization domain containing 2 Neighboring gene CYLD lysine 63 deubiquitinase Neighboring gene ribosomal protein S7 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatidylinositol phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables phosphatidylinositol-3-phosphate binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables phosphatidylinositol-4,5-bisphosphate binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in early endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in early endosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027840.3NP_082116.1  sorting nexin-20

      See identical proteins and their annotated locations for NP_082116.1

      Status: PROVISIONAL

      Source sequence(s)
      AC126054
      Consensus CDS
      CCDS22512.1
      UniProtKB/Swiss-Prot
      Q9D2Y5
      UniProtKB/TrEMBL
      A0A0R4J0D0
      Related
      ENSMUSP00000034087.8, ENSMUST00000034087.9
      Conserved Domains (1) summary
      cl02563
      Location:73186
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      89353189..89362769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531371.4XP_006531434.1  sorting nexin-20 isoform X1

      See identical proteins and their annotated locations for XP_006531434.1

      UniProtKB/Swiss-Prot
      Q9D2Y5
      UniProtKB/TrEMBL
      A0A0R4J0D0
      Conserved Domains (1) summary
      cl02563
      Location:73186
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    2. XM_011248503.4XP_011246805.1  sorting nexin-20 isoform X2

      See identical proteins and their annotated locations for XP_011246805.1

      Conserved Domains (1) summary
      cl02563
      Location:73186
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Support Center