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    Epsti1 epithelial stromal interaction 1 (breast) [ Mus musculus (house mouse) ]

    Gene ID: 108670, updated on 23-Jun-2021

    Summary

    Official Symbol
    Epsti1provided by MGI
    Official Full Name
    epithelial stromal interaction 1 (breast)provided by MGI
    Primary source
    MGI:MGI:1915168
    See related
    Ensembl:ENSMUSG00000022014
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BRE; BRESI1; 2310046K10Rik; 5033415K03Rik
    Expression
    Biased expression in spleen adult (RPKM 10.2), thymus adult (RPKM 9.5) and 13 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Epsti1 in Genome Data Viewer
    Location:
    14; 14 D3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (78141679..78240096)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (77904239..78002656)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (78304046..78402463)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 1587 Neighboring gene DnaJ heat shock protein family (Hsp40) member C15 Neighboring gene family with sequence similarity 216, member B Neighboring gene predicted gene, 30608

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    epithelial-stromal interaction protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029495.2NP_083771.1  epithelial-stromal interaction protein 1 isoform a

      See identical proteins and their annotated locations for NP_083771.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (a) represents the longer transcript and encodes the longer isoform (a).
      Source sequence(s)
      AK077223, AK135710, BY719992
      Consensus CDS
      CCDS56971.1
      UniProtKB/Swiss-Prot
      Q8VDI1
      UniProtKB/TrEMBL
      A0A140T8I6
      Related
      ENSMUSP00000022591.9, ENSMUST00000022591.16
      Conserved Domains (1) summary
      pfam04687
      Location:13197
      Microvir_H; Microvirus H protein (pilot protein)
    2. NM_178825.4NP_849147.1  epithelial-stromal interaction protein 1 isoform b

      See identical proteins and their annotated locations for NP_849147.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (b) uses an alternate 3' coding region and 3' UTR, compared to variant a. The resulting isoform (b) has a shorter and distinct C-terminus, compared to isoform a.
      Source sequence(s)
      AI592213, AK017174, BE628578, BY719992
      Consensus CDS
      CCDS88718.1
      UniProtKB/Swiss-Prot
      Q8VDI1
      UniProtKB/TrEMBL
      Q9D3Q7
      Related
      ENSMUSP00000154502.2, ENSMUST00000227903.2
      Conserved Domains (1) summary
      pfam04687
      Location:13197
      Microvir_H; Microvirus H protein (pilot protein)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      78141679..78240096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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