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    Snx30 sorting nexin family member 30 [ Mus musculus (house mouse) ]

    Gene ID: 209131, updated on 23-Jun-2021

    Summary

    Official Symbol
    Snx30provided by MGI
    Official Full Name
    sorting nexin family member 30provided by MGI
    Primary source
    MGI:MGI:2443882
    See related
    Ensembl:ENSMUSG00000028385
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4732481H14Rik; C030041J06Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.4), placenta adult (RPKM 4.7) and 24 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Snx30 in Genome Data Viewer
    Location:
    4; 4 B3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59805137..59904740)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59805131..59904740)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (59818522..59917612)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA E130308A19 gene Neighboring gene predicted gene, 54283 Neighboring gene INTS3 and NABP interacting protein Neighboring gene sorting nexin 2 pseudogene Neighboring gene solute carrier family 46, member 2 Neighboring gene major urinary protein 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC106086

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    sorting nexin-30
    Names
    novel PX domain containing protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172468.2NP_766056.1  sorting nexin-30

      See identical proteins and their annotated locations for NP_766056.1

      Status: VALIDATED

      Source sequence(s)
      AK147437, AL831738, BB645079
      Consensus CDS
      CCDS18226.1
      UniProtKB/Swiss-Prot
      Q8CE50
      Related
      ENSMUSP00000030080.7, ENSMUST00000030080.7
      Conserved Domains (2) summary
      cd06860
      Location:91206
      PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
      cd07667
      Location:190429
      BAR_SNX30; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      59805137..59904740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006537724.3XP_006537787.1  sorting nexin-30 isoform X1

      See identical proteins and their annotated locations for XP_006537787.1

      Conserved Domains (2) summary
      cd06860
      Location:1102
      PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
      cl12013
      Location:86325
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    2. XM_006537725.5XP_006537788.1  sorting nexin-30 isoform X1

      See identical proteins and their annotated locations for XP_006537788.1

      Conserved Domains (2) summary
      cd06860
      Location:1102
      PX_SNX7_30_like; The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30
      cl12013
      Location:86325
      BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
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