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    Slco1a6 solute carrier organic anion transporter family, member 1a6 [ Mus musculus (house mouse) ]

    Gene ID: 28254, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slco1a6provided by MGI
    Official Full Name
    solute carrier organic anion transporter family, member 1a6provided by MGI
    Primary source
    MGI:MGI:1351906
    See related
    Ensembl:ENSMUSG00000079262
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Oat; Oatp5; Slc21; Oatp-5; AI790453; Slc21a13; 4930422F19Rik
    Expression
    Restricted expression toward kidney adult (RPKM 11.4) See more
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    Genomic context

    See Slco1a6 in Genome Data Viewer
    Location:
    6; 6 G2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (142031487..142131903, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (142085761..142186177, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (142034289..142134670, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30843 Neighboring gene solute carrier organic anion transporter family, member 1a1 Neighboring gene predicted gene 6614 Neighboring gene predicted gene, 18159 Neighboring gene predicted gene, 53313 Neighboring gene solute carrier organic anion transporter family, member 1a5 Neighboring gene islet amyloid polypeptide

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables bile acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables sodium-independent organic anion transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    solute carrier organic anion transporter family member 1A6
    Names
    kidney-specific organic anion-transporting polypeptide 5
    organic anion-transporting polypeptide
    solute carrier family (organic anion transporter) member 13
    solute carrier family 21 (organic anion transporter), member 13
    solute carrier family 21 member 13

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001381930.1NP_001368859.1  solute carrier organic anion transporter family member 1A6

      Status: VALIDATED

      Source sequence(s)
      AC134836, AK142587
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
    2. NM_023718.3NP_076207.1  solute carrier organic anion transporter family member 1A6

      See identical proteins and their annotated locations for NP_076207.1

      Status: VALIDATED

      Source sequence(s)
      AK142587, AK143970
      Consensus CDS
      CCDS39693.1
      UniProtKB/Swiss-Prot
      Q99J94
      Related
      ENSMUSP00000107458.4, ENSMUST00000111827.4
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      142031487..142131903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506965.3XP_006507028.1  solute carrier organic anion transporter family member 1A6 isoform X1

      See identical proteins and their annotated locations for XP_006507028.1

      UniProtKB/Swiss-Prot
      Q99J94
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
    2. XM_011241587.2XP_011239889.1  solute carrier organic anion transporter family member 1A6 isoform X1

      See identical proteins and their annotated locations for XP_011239889.1

      UniProtKB/Swiss-Prot
      Q99J94
      Conserved Domains (1) summary
      TIGR00805
      Location:1625
      oat; sodium-independent organic anion transporter
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