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    2610005L07Rik RIKEN cDNA 2610005L07 gene [ Mus musculus (house mouse) ]

    Gene ID: 381598, updated on 8-Feb-2024

    Summary

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    Official Symbol
    2610005L07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2610005L07 geneprovided by MGI
    Gene description
    cadherin 11 pseudogene
    Primary source
    MGI:MGI:1914283
    See related
    Ensembl:ENSMUSG00000121345 AllianceGenome:MGI:1914283
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810038F24Rik; 6720476A01Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 25.7), limb E14.5 (RPKM 25.6) and 28 other tissues See more
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    Genomic context

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    Location:
    8 A1.3; 8 10.35 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20016466..20055498)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20385782..20424814, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53404 Neighboring gene STARR-positive B cell enhancer ABC_E3770 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19798473-19798774 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19799661-19799962 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-seq mESC enhancer starr_20880 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20877 Neighboring gene POTE ankyrin domain family member 3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The PDGF signaling pathway controls multiple steroid-producing lineages. Schmahl J, et al. Genes Dev, 2008 Dec 1. PMID 19056881, Free PMC Article
    2. PDGF signaling specificity is mediated through multiple immediate early genes. Schmahl J, et al. Nat Genet, 2007 Jan. PMID 17143286
    3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Other Names

    • cadherin 11 pseudogene

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within embryonic cranial skeleton morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within estrogen metabolic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within female gonad development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within fibroblast migration IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within luteinization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within platelet-derived growth factor receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within skeletal system morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028428.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK131627
      Related
      ENSMUST00000140111.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      20016466..20055498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001024708.1: Suppressed sequence

      Description
      NM_001024708.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

    2. NM_001033456.1: Suppressed sequence

      Description
      NM_001033456.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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