Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    2610005L07Rik RIKEN cDNA 2610005L07 gene [ Mus musculus (house mouse) ]

    Gene ID: 381598, updated on 23-Jun-2021

    Summary

    Official Symbol
    2610005L07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2610005L07 geneprovided by MGI
    Gene description
    cadherin 11 pseudogene
    Primary source
    MGI:MGI:1914283
    See related
    Ensembl:ENSMUSG00000071793
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810038F24Rik; 6720476A01Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 25.7), limb E14.5 (RPKM 25.6) and 28 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 2610005L07Rik in Genome Data Viewer
    Location:
    8; 8 A1.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20016466..20055498)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20385782..20424814, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (19981360..20020392, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53404 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene ribosomal protein S7 pseudogene Neighboring gene POTE ankyrin domain family member B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028428.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK131627
      Related
      ENSMUST00000140111.8

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      20016466..20055498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001024708.1: Suppressed sequence

      Description
      NM_001024708.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    2. NM_001033456.1: Suppressed sequence

      Description
      NM_001033456.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Support Center