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    Gm3604 predicted gene 3604 [ Mus musculus (house mouse) ]

    Gene ID: 100041979, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gm3604provided by MGI
    Official Full Name
    predicted gene 3604provided by MGI
    Primary source
    MGI:MGI:3781781
    See related
    Ensembl:ENSMUSG00000094942
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Gm3604 in Genome Data Viewer
    Location:
    13 B3; 13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62514534..62561441, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62367716..62411972, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (62469076..62484534, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 19792 Neighboring gene predicted gene, 53216 Neighboring gene selenoprotein K, pseudogene 6 Neighboring gene predicted gene, 23855 Neighboring gene predicted gene, 53788 Neighboring gene zinc finger protein 935

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein LOC100041979

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162910.1NP_001156382.1  uncharacterized protein LOC100041979

      Status: VALIDATED

      Source sequence(s)
      CT573034
      Consensus CDS
      CCDS79201.1
      UniProtKB/TrEMBL
      A0A087WPN2
      Related
      ENSMUSP00000139845.2, ENSMUST00000187656.7
      Conserved Domains (5) summary
      smart00349
      Location:445
      KRAB; krueppel associated box
      COG5048
      Location:130558
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:303323
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:440
      KRAB; KRAB box
      pfam13465
      Location:175200
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      62514534..62561441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157792.1XP_036013685.1  uncharacterized protein LOC100041979 isoform X2

      Conserved Domains (2) summary
      COG5048
      Location:98526
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:271291
      ZF_C2H2; C2H2 Zn finger [structural motif]
    2. XM_011244440.4XP_011242742.1  uncharacterized protein LOC100041979 isoform X2

      See identical proteins and their annotated locations for XP_011242742.1

      Related
      ENSMUSP00000103623.4, ENSMUST00000107989.7
      Conserved Domains (2) summary
      COG5048
      Location:98526
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:271291
      ZF_C2H2; C2H2 Zn finger [structural motif]
    3. XM_036157793.1XP_036013686.1  uncharacterized protein LOC100041979 isoform X2

      Conserved Domains (2) summary
      COG5048
      Location:98526
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:271291
      ZF_C2H2; C2H2 Zn finger [structural motif]
    4. XM_036157794.1XP_036013687.1  uncharacterized protein LOC100041979 isoform X3

      Conserved Domains (2) summary
      COG5048
      Location:16415
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:160180
      ZF_C2H2; C2H2 Zn finger [structural motif]
    5. XM_011244438.4XP_011242740.1  uncharacterized protein LOC100041979 isoform X1

      Conserved Domains (3) summary
      COG5048
      Location:116544
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:289309
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:230
      KRAB; KRAB box
    6. XM_011244441.4XP_011242743.1  uncharacterized protein LOC100041979 isoform X2

      See identical proteins and their annotated locations for XP_011242743.1

      Conserved Domains (2) summary
      COG5048
      Location:98526
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:271291
      ZF_C2H2; C2H2 Zn finger [structural motif]
    7. XM_036157795.1XP_036013688.1  uncharacterized protein LOC100041979 isoform X4

      Related
      ENSMUSP00000144048.2, ENSMUST00000202194.2
      Conserved Domains (1) summary
      pfam01352
      Location:444
      KRAB; KRAB box
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