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    Inip INTS3 and NABP interacting protein [ Mus musculus (house mouse) ]

    Gene ID: 66209, updated on 23-Jun-2021

    Summary

    Official Symbol
    Inipprovided by MGI
    Official Full Name
    INTS3 and NABP interacting proteinprovided by MGI
    Primary source
    MGI:MGI:1913459
    See related
    Ensembl:ENSMUSG00000038544
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ssbip1; AA399876; 1110054O05Rik; 2610312O17Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 8.6), thymus adult (RPKM 7.0) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Inip in Genome Data Viewer
    Location:
    4; 4 B3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59769637..59783855, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59769637..59783885, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (59782514..59796727, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene hydroxysteroid dehydrogenase like 2 Neighboring gene RIKEN cDNA E130308A19 gene Neighboring gene high mobility group protein B1-like Neighboring gene sorting nexin family member 30 Neighboring gene sorting nexin 2 pseudogene Neighboring gene solute carrier family 46, member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in DNA repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in DNA repair ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to DNA damage stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to ionizing radiation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of SOSS complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of SOSS complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in site of double-strand break ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    SOSS complex subunit C
    Names
    SOSS-C
    SSB-interacting protein 1
    sensor of single-strand DNA complex subunit C
    sensor of ssDNA subunit C
    single-stranded DNA-binding protein-interacting protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013577.1NP_001013595.1  SOSS complex subunit C

      See identical proteins and their annotated locations for NP_001013595.1

      Status: VALIDATED

      Source sequence(s)
      AK004256, AL806512, BB641174
      Consensus CDS
      CCDS18225.1
      UniProtKB/Swiss-Prot
      Q3TXT3
      Related
      ENSMUSP00000092673.5, ENSMUST00000095063.11
      Conserved Domains (1) summary
      pfam15925
      Location:18101
      SOSSC; SOSS complex subunit C

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      59769637..59783855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253695.2XP_030109555.1  SOSS complex subunit C isoform X1

      Related
      ENSMUSP00000103150.2, ENSMUST00000107526.8
      Conserved Domains (1) summary
      pfam15925
      Location:471
      SOSSC; SOSS complex subunit C
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