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    Slc35f5 solute carrier family 35, member F5 [ Mus musculus (house mouse) ]

    Gene ID: 74150, updated on 25-Nov-2021

    Summary

    Official Symbol
    Slc35f5provided by MGI
    Official Full Name
    solute carrier family 35, member F5provided by MGI
    Primary source
    MGI:MGI:1921400
    See related
    Ensembl:ENSMUSG00000026342
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI646727; 1300003P13Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 30.3), placenta adult (RPKM 26.8) and 26 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Slc35f5 in Genome Data Viewer
    Location:
    1; 1 E2.3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (125488275..125523571)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (125560528..125595834)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (127457593..127492261)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene dipeptidylpeptidase 10 Neighboring gene predicted gene, 35355 Neighboring gene ARP3 actin-related protein 3 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene G protein-coupled receptor 39 Neighboring gene predicted gene, 41943

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of peptide transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    solute carrier family 35 member F5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356294.1NP_001343223.1  solute carrier family 35 member F5 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region, and uses an alternate start codon, compared to variant 1. The encoded isoform (2) has a longer and distinct N-terminus.
      Source sequence(s)
      AC157824
      Conserved Domains (1) summary
      COG0697
      Location:268493
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    2. NM_028787.5NP_083063.2  solute carrier family 35 member F5 isoform 1

      See identical proteins and their annotated locations for NP_083063.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the shorter isoform (1).
      Source sequence(s)
      AA038985, AK145848, CJ171116
      Consensus CDS
      CCDS35694.1
      UniProtKB/Swiss-Prot
      Q8R314
      Related
      ENSMUSP00000027580.5, ENSMUST00000027580.11
      Conserved Domains (2) summary
      COG0697
      Location:246471
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      pfam00892
      Location:328471
      EamA; EamA-like transporter family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      125488275..125523571
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006529912.5XP_006529975.1  solute carrier family 35 member F5 isoform X1

      Conserved Domains (1) summary
      COG0697
      Location:200425
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    RNA

    1. XR_001778392.3 RNA Sequence

    2. XR_004934820.1 RNA Sequence

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