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    Bbln bublin coiled coil protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499780, updated on 5-Apr-2021

    Summary

    Official Symbol
    Bblnprovided by RGD
    Official Full Name
    bublin coiled coil proteinprovided by RGD
    Primary source
    RGD:1561113
    See related
    Ensembl:ENSRNOG00000022681
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561113
    Expression
    Biased expression in Brain (RPKM 217.3), Adrenal (RPKM 200.1) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Bbln in Genome Data Viewer
    Location:
    3p12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    108 current mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (15674577..15677393, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (11408076..11410907, complement)

    Chromosome 3 - NC_051338.1Genomic Context describing neighboring genes Neighboring gene dynamin 1 Neighboring gene U1 spliceosomal RNA Neighboring gene CDKN1A interacting zinc finger protein 1 Neighboring gene lipocalin 2 Neighboring gene uncharacterized LOC120101523 Neighboring gene prostaglandin E synthase 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    UPF0184 protein C9orf16 homolog; bublin coiled coil protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mRatBN7.2 Primary Assembly

    Genomic

    1. NC_051338.1 Reference mRatBN7.2 Primary Assembly

      Range
      15674577..15677393 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_575113.8XP_575113.2  UPF0184 protein C9orf16 homolog

      See identical proteins and their annotated locations for XP_575113.2

      UniProtKB/TrEMBL
      D3ZBT2
      Related
      ENSRNOP00000031226.3
      Conserved Domains (1) summary
      pfam03670
      Location:183
      UPF0184; Uncharacterized protein family (UPF0184)
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