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    Tmem89 transmembrane protein 89 [ Mus musculus (house mouse) ]

    Gene ID: 69384, updated on 5-Mar-2024

    Summary

    Official Symbol
    Tmem89provided by MGI
    Official Full Name
    transmembrane protein 89provided by MGI
    Primary source
    MGI:MGI:1916634
    See related
    Ensembl:ENSMUSG00000025652 AllianceGenome:MGI:1916634
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700024B07Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM89 (transmembrane protein 89). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 144.8) See more
    Orthologs
    NEW
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    Genomic context

    Location:
    9 F2; 9 59.63 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (108743687..108744631)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (108914619..108915563)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene cadherin, EGF LAG seven-pass G-type receptor 3 Neighboring gene STARR-positive B cell enhancer ABC_E5104 Neighboring gene solute carrier family 26, member 6 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:108838602-108838711 Neighboring gene ubiquinol-cytochrome c reductase core protein 1 Neighboring gene collagen, type VII, alpha 1 Neighboring gene microRNA 711

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027066.1NP_081342.1  transmembrane protein 89 precursor

      See identical proteins and their annotated locations for NP_081342.1

      Status: VALIDATED

      Source sequence(s)
      BY706371
      Consensus CDS
      CCDS52928.1
      UniProtKB/Swiss-Prot
      Q2M2L9, Q9DA04
      Related
      ENSMUSP00000026744.6, ENSMUST00000026744.6
      Conserved Domains (1) summary
      pfam15098
      Location:23165
      TMEM89; TMEM89 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      108743687..108744631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)