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    Tnmd tenomodulin [ Mus musculus (house mouse) ]

    Gene ID: 64103, updated on 5-Mar-2024

    Summary

    Official Symbol
    Tnmdprovided by MGI
    Official Full Name
    tenomodulinprovided by MGI
    Primary source
    MGI:MGI:1929885
    See related
    Ensembl:ENSMUSG00000031250 AllianceGenome:MGI:1929885
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TeM; ChM1L; Bricd4; 1110017I01Rik
    Summary
    Acts upstream of or within endothelial cell morphogenesis; negative regulation of angiogenesis; and negative regulation of endothelial cell proliferation. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in several structures, including brain; limb; sensory organ; skeletal system; and spinal cord. Orthologous to human TNMD (tenomodulin). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in limb E14.5 (RPKM 26.1) and CNS E14 (RPKM 2.6) See more
    Orthologs
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    Genomic context

    See Tnmd in Genome Data Viewer
    Location:
    X E3; X 55.47 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (132751757..132766326)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (133851008..133865577)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene Neighboring gene protocadherin 19 Neighboring gene STARR-seq mESC enhancer starr_47952 Neighboring gene predicted gene, 26851 Neighboring gene STARR-seq mESC enhancer starr_47953 Neighboring gene tetraspanin 6 Neighboring gene sushi-repeat-containing protein, X-linked 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (3) 

    General protein information

    Preferred Names
    tenomodulin
    Names
    chondromodulin-1-like protein
    chondromodulin-I-like protein
    mChM1L
    mTeM
    myodulin
    tendin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_022322.2NP_071717.1  tenomodulin

      See identical proteins and their annotated locations for NP_071717.1

      Status: VALIDATED

      Source sequence(s)
      BC049944
      Consensus CDS
      CCDS30386.1
      UniProtKB/Swiss-Prot
      Q8CET4, Q9EP64
      Related
      ENSMUSP00000033602.9, ENSMUST00000033602.9
      Conserved Domains (1) summary
      smart01039
      Location:93186
      BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      132751757..132766326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)