Slamf9 SLAM family member 9 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Slamf9provided by RGD
Official Full Name: SLAM family member 9provided by RGD
Primary source: RGD:1305945
See related: Ensembl:ENSRNOG00000008045 AllianceGenome:RGD:1305945
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be involved in T cell activation. Predicted to act upstream of or within defense response to bacterium; plasmacytoid dendritic cell chemotaxis; and plasmacytoid dendritic cell differentiation. Predicted to be located in cell surface. Predicted to be active in external side of plasma membrane. Orthologous to human SLAMF9 (SLAM family member 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Spleen (RPKM 52.7), Thymus (RPKM 49.0) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 13q24

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	13	NC_086031.1 (87474290..87477108)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	13	NC_051348.1 (84941896..84944749)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	13	NC_005112.4 (90836419..90856913, complement)

Chromosome 13 - NC_086031.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in T cell activation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within defense response to bacterium	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within plasmacytoid dendritic cell chemotaxis	ISO Inferred from Sequence Orthology more info
involved_in plasmacytoid dendritic cell cytokine production	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within plasmacytoid dendritic cell differentiation	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in cell surface	ISO Inferred from Sequence Orthology more info
is_active_in external side of plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: SLAM family member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001105971.1 → NP_001099441.1 SLAM family member 9 precursor

See identical proteins and their annotated locations for NP_001099441.1

Status: PROVISIONAL

Source sequence(s)

CH473985

UniProtKB/TrEMBL

A6JG58, D3ZLA6

Related

ENSRNOP00000010594.5, ENSRNOT00000010594.8

Conserved Domains (3) summary

cd00096
Location:133 → 137

Ig; Ig strand A [structural motif]

cd16842
Location:27 → 128

Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

cl11960
Location:133 → 213

Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086031.1 Reference GRCr8

Range

87474290..87477108

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039090519.2 → XP_038946447.1 SLAM family member 9 isoform X1

Conserved Domains (1) summary

cd16842
Location:27 → 128

Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family