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    Spata19 spermatogenesis associated 19 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 171403, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Spata19provided by RGD
    Official Full Name
    spermatogenesis associated 19provided by RGD
    Primary source
    RGD:620628
    See related
    Ensembl:ENSRNOG00000031438 AllianceGenome:RGD:620628
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Spas1; spergen-1
    Summary
    Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in mitochondrial outer membrane. Orthologous to human SPATA19 (spermatogenesis associated 19). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 905.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Spata19 in Genome Data Viewer
    Location:
    8q13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (34057130..34079097)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (25814922..25820663)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (28454938..28460645)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD113/SNORD114 family Neighboring gene uncharacterized LOC120094099 Neighboring gene uncharacterized LOC134480005 Neighboring gene immunoglobulin superfamily, member 9B Neighboring gene opioid binding protein/cell adhesion molecule-like Neighboring gene endothelial differentiation-related factor 1, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Complementary DNA cloning and characterization of rat spergen-1, a spermatogenic cell-specific gene-1, containing a mitochondria-targeting signal. Doiguchi M, et al. Biol Reprod, 2002 May. PMID 11967211
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sperm mitochondrion organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sperm mitochondrion organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in sperm mitochondrion organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial outer membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in mitochondrial outer membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in sperm flagellum ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in sperm midpiece IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in sperm midpiece IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in sperm midpiece ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in sperm midpiece ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis-associated protein 19, mitochondrial
    Names
    spermatogenic cell-specific gene 1 protein
    spermatogenic specific-gene1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134384.1 → NP_599211.1  spermatogenesis-associated protein 19, mitochondrial precursor

      See identical proteins and their annotated locations for NP_599211.1

      Status: PROVISIONAL

      Source sequence(s)
      AB057408
      UniProtKB/Swiss-Prot
      Q920Q3
      UniProtKB/TrEMBL
      A6JYE3, F1M9B7
      Related
      ENSRNOP00000040918.5, ENSRNOT00000051573.5
      Conserved Domains (1) summary
      pfam15212
      Location:25 → 154
      SPATA19; Spermatogenesis-associated protein 19, mitochondrial

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      34057130..34079097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063264838.1 → XP_063120908.1  spermatogenesis-associated protein 19, mitochondrial isoform X1

      UniProtKB/Swiss-Prot
      Q920Q3
      UniProtKB/TrEMBL
      A6JYE3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q920Q3.1 GenPept UniProtKB/Swiss-Prot:Q920Q3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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