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    Sft2d3 SFT2 domain containing 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 364835, updated on 5-Mar-2024

    Summary

    Official Symbol
    Sft2d3provided by RGD
    Official Full Name
    SFT2 domain containing 3provided by RGD
    Primary source
    RGD:1561764
    See related
    Ensembl:ENSRNOG00000016216 AllianceGenome:RGD:1561764
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561764
    Summary
    Predicted to be involved in protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D3 (SFT2 domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See Sft2d3 in Genome Data Viewer
    Location:
    18p12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (23811330..23813530, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (23537105..23539305, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (24691281..24693481, complement)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA21 Neighboring gene RNA polymerase II subunit D Neighboring gene WD repeat domain 33 Neighboring gene uncharacterized LOC120098222 Neighboring gene LIM zinc finger domain containing 2 Neighboring gene G protein-coupled receptor 17 Neighboring gene myosin VIIb

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    vesicle transport protein SFT2C

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108887.1NP_001102357.1  vesicle transport protein SFT2C

      See identical proteins and their annotated locations for NP_001102357.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473974
      UniProtKB/TrEMBL
      A6J2P5, D3ZV26
      Related
      ENSRNOP00000063211.2, ENSRNOT00000021708.8
      Conserved Domains (1) summary
      pfam04178
      Location:93203
      Got1; Got1/Sft2-like family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      23811330..23813530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)