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    LOC106182250 uncharacterized LOC106182250 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 106182250, updated on 13-Apr-2024

    Summary

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    Symbol
    LOC106182250provided by RGD
    Full Name
    uncharacterized LOC106182250provided by RGD
    Primary source
    RGD:10059730
    See related
    AllianceGenome:RGD:10059730
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
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    Genomic context

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    See LOC106182250 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (171928488..171935853, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (166646265..166653630, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (173487137..173494502, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 4 Neighboring gene TNF receptor superfamily member 18 Neighboring gene tubulin tyrosine ligase like 10 Neighboring gene microRNA 3548 Neighboring gene microRNA 200a Neighboring gene microRNA 429 Neighboring gene microRNA 200b Neighboring gene similar to human chromosome 1 open reading frame 159 Neighboring gene ring finger protein 223

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcription Factor Hepatocyte Nuclear Factor-1β (HNF-1β) Regulates MicroRNA-200 Expression through a Long Noncoding RNA. Hajarnis SS, et al. J Biol Chem, 2015 Oct 9. PMID 26292219, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Other Names

    • Gm13648-like
    • miR-200b/200a/429 miRNA cluster host

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132445.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      171928488..171935853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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