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    E430024I08Rik RIKEN cDNA E430024I08 gene [ Mus musculus (house mouse) ]

    Gene ID: 622175, updated on 8-Feb-2024

    Summary

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    Official Symbol
    E430024I08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E430024I08 geneprovided by MGI
    Primary source
    MGI:MGI:3649010
    See related
    AllianceGenome:MGI:3649010
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG622175
    Expression
    Broad expression in limb E14.5 (RPKM 1.8), CNS E11.5 (RPKM 1.8) and 24 other tissues See more
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    Genomic context

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    See E430024I08Rik in Genome Data Viewer
    Location:
    13; 13 C1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (74580343..74611722, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (74432224..74463612, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene ferritin light polypeptide 1, pseudogene 1 Neighboring gene microRNA 692-3 Neighboring gene STARR-seq mESC enhancer starr_35009 Neighboring gene predicted gene, 41004 Neighboring gene STARR-seq mESC enhancer starr_35011 Neighboring gene predicted gene, 57595 Neighboring gene STARR-positive B cell enhancer ABC_E4079 Neighboring gene zinc finger protein 825 Neighboring gene STARR-positive B cell enhancer ABC_E9401 Neighboring gene STARR-seq mESC enhancer starr_35015 Neighboring gene upstream binding transcription factor, RNA polymerase I pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E7252 Neighboring gene stomatin (Epb7.2)-like 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      74580343..74611722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004938198.1 RNA Sequence

    2. XR_004938197.1 RNA Sequence

    3. XR_004938196.1 RNA Sequence

    4. XR_001781001.3 RNA Sequence

    5. XR_004938195.1 RNA Sequence

    6. XR_004938199.1 RNA Sequence

    7. XR_004938200.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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