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    Rps4l ribosomal protein S4-like [ Mus musculus (house mouse) ]

    Gene ID: 66184, updated on 2-Apr-2024

    Summary

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    Official Symbol
    Rps4lprovided by MGI
    Official Full Name
    ribosomal protein S4-likeprovided by MGI
    Primary source
    MGI:MGI:1913434
    See related
    AllianceGenome:MGI:1913434
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rps4y2; 1110033J19Rik
    Summary
    Is expressed in embryo. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See Rps4l in Genome Data Viewer
    Location:
    6 G3; 6 78.49 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (148256154..148257094)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (148354656..148355596)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4732416N19 gene Neighboring gene ERGIC and golgi 2 Neighboring gene STARR-positive B cell enhancer ABC_E3694 Neighboring gene transmembrane and tetratricopeptide repeat containing 1 Neighboring gene predicted gene, 52483 Neighboring gene STARR-seq mESC enhancer starr_17834 Neighboring gene predicted gene, 44020 Neighboring gene STARR-seq mESC enhancer starr_17837 Neighboring gene STARR-seq mESC enhancer starr_17838 Neighboring gene predicted gene, 36613

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ectopic expression of DNA methyltransferases DNMT3A2 and DNMT3L leads to aberrant hypermethylation and postnatal lethality in mice. Sasaki K, et al. Mol Reprod Dev, 2019 Jun. PMID 30834655, Free PMC Article
    2. Identification and expression of an autosomal paralogue of ribosomal protein S4, X-linked, in mice: potential involvement of testis-specific ribosomal proteins in translation and spermatogenesis. Sugihara Y, et al. Gene, 2013 May 25. PMID 23500592
    3. Functional Proteomic Analysis of Repressive Histone Methyltransferase Complexes Reveals ZNF518B as a G9A Regulator. Maier VK, et al. Mol Cell Proteomics, 2015 Jun. PMID 25680957, Free PMC Article
    4. RAD21 cooperates with pluripotency transcription factors in the maintenance of embryonic stem cell identity. Nitzsche A, et al. PLoS One, 2011 May 12. PMID 21589869, Free PMC Article
    5. Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Harrison SM, et al. Development, 1995 Aug. PMID 7671812

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. in the present study, a new paralogue of X-linked ribosomal protein S4 has been identified in the testis; the gene encoding this paralogue was autosomal, intronless and expressed predominantly in the testis
      Title: Identification and expression of an autosomal paralogue of ribosomal protein S4, X-linked, in mice: potential involvement of testis-specific ribosomal proteins in translation and spermatogenesis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • ribosomal protein S4, X-linked pseudogene
    • ribosomal protein S4, Y-linked 2

    Clone Names

    • MGC59460

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003634.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AK132160

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      148256154..148257094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_025405.2: Suppressed sequence

      Description
      NM_025405.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

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