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    Zfand4 zinc finger AN1-type containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 286998, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Zfand4provided by RGD
    Official Full Name
    zinc finger AN1-type containing 4provided by RGD
    Primary source
    RGD:628707
    See related
    Ensembl:ENSRNOG00000011791 AllianceGenome:RGD:628707
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rsd7; Anubl1
    Summary
    Orthologous to human ZFAND4 (zinc finger AN1-type containing 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 148.5), Adrenal (RPKM 58.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfand4 in Genome Data Viewer
    Location:
    4q42
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (150999821..151071942)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (149327339..149399495)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (148198810..148270273)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domain family 1 Neighboring gene small RNA binding exonuclease protection factor La like 1 Neighboring gene WASH complex subunit 2C Neighboring gene ribosomal protein L9, pseudogene 19 Neighboring gene membrane associated ring-CH-type finger 8 Neighboring gene ribosomal protein L23A like 6 Neighboring gene transfer RNA proline (anticodon GGG) 3 Neighboring gene arachidonate 5-lipoxygenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AN1-type zinc finger protein 4
    Names
    AN1, ubiquitin-like, homolog
    AN1-type zinc finger and ubiquitin domain-containing protein 1
    zinc finger, AN1-type domain 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173332.3 → NP_775454.3  AN1-type zinc finger protein 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      B1WC93, F7EY43
      Related
      ENSRNOP00000015742.5, ENSRNOT00000015742.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      150999821..151071942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107168.1 → XP_038963096.1  AN1-type zinc finger protein 4 isoform X2

      UniProtKB/TrEMBL
      B1WC93
      Conserved Domains (1) summary
      cd01802
      Location:54 → 127
      Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

    2. XM_063285659.1 → XP_063141729.1  AN1-type zinc finger protein 4 isoform X3

      UniProtKB/TrEMBL
      B1WC93

    3. XM_063285657.1 → XP_063141727.1  AN1-type zinc finger protein 4 isoform X1

      UniProtKB/TrEMBL
      B1WC93

    4. XM_039107170.2 → XP_038963098.1  AN1-type zinc finger protein 4 isoform X2

      UniProtKB/TrEMBL
      B1WC93
      Conserved Domains (1) summary
      cd01802
      Location:54 → 127
      Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

    5. XM_063285660.1 → XP_063141730.1  AN1-type zinc finger protein 4 isoform X3

      UniProtKB/TrEMBL
      B1WC93

    6. XM_006237141.4 → XP_006237203.1  AN1-type zinc finger protein 4 isoform X3

      See identical proteins and their annotated locations for XP_006237203.1

      UniProtKB/TrEMBL
      B1WC93
      Conserved Domains (3) summary
      cd01802
      Location:45 → 147
      AN1_N; ubiquitin-like domain of AN1
      smart00154
      Location:699 → 737
      ZnF_AN1; AN1-like Zinc finger
      smart00213
      Location:72 → 143
      UBQ; Ubiquitin homologues

    7. XM_039107167.2 → XP_038963095.1  AN1-type zinc finger protein 4 isoform X1

      UniProtKB/TrEMBL
      B1WC93
      Conserved Domains (1) summary
      cd01802
      Location:72 → 145
      Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

    8. XM_039107172.2 → XP_038963100.1  AN1-type zinc finger protein 4 isoform X4

      UniProtKB/TrEMBL
      B1WC93
      Conserved Domains (1) summary
      cd01802
      Location:72 → 145
      Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

    9. XM_039107179.2 → XP_038963107.1  AN1-type zinc finger protein 4 isoform X8

      Conserved Domains (1) summary
      cd01802
      Location:72 → 145
      Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

    10. XM_063285658.1 → XP_063141728.1  AN1-type zinc finger protein 4 isoform X1

      UniProtKB/TrEMBL
      B1WC93

    11. XM_039107173.2 → XP_038963101.1  AN1-type zinc finger protein 4 isoform X5

    12. XM_063285661.1 → XP_063141731.1  AN1-type zinc finger protein 4 isoform X6

    13. XM_039107177.2 → XP_038963105.1  AN1-type zinc finger protein 4 isoform X7

    14. XM_039107174.2 → XP_038963102.1  AN1-type zinc finger protein 4 isoform X5

    15. XM_063285662.1 → XP_063141732.1  AN1-type zinc finger protein 4 isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version

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