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    Tmem72 transmembrane protein 72 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362424, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tmem72provided by RGD
    Official Full Name
    transmembrane protein 72provided by RGD
    Primary source
    RGD:1308850
    See related
    Ensembl:ENSRNOG00000023340 AllianceGenome:RGD:1308850
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308850
    Summary
    Predicted to be integral component of membrane. Orthologous to human TMEM72 (transmembrane protein 72). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 392.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    4q42
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (151620696..151645989, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (149946296..149973550, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (148819906..148845199, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 422 Neighboring gene Ras association domain family member 4 Neighboring gene DEPP autophagy regulator 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transmembrane protein 72

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108643.1 → NP_001102113.1  transmembrane protein 72

      See identical proteins and their annotated locations for NP_001102113.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473964
      UniProtKB/TrEMBL
      A6IL28, D4A2U6
      Related
      ENSRNOP00000035275.4, ENSRNOT00000037397.6
      Conserved Domains (1) summary
      pfam16054
      Location:2 → 189
      TMEM72; Transmembrane protein family 72

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      151620696..151645989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107864.2 → XP_038963792.1  transmembrane protein 72 isoform X1

      Conserved Domains (1) summary
      pfam16054
      Location:34 → 178
      TMEM72; Transmembrane protein family 72
    Nucleotide Protein Strain
    Heading Accession and Version

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