U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Bsdc1 BSD domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 297890, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Bsdc1provided by RGD
    Official Full Name
    BSD domain containing 1provided by RGD
    Primary source
    RGD:1311622
    See related
    Ensembl:ENSRNOG00000008338 AllianceGenome:RGD:1311622
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311622
    Summary
    Predicted to be active in cytoplasm. Orthologous to human BSDC1 (BSD domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Spleen (RPKM 353.4), Kidney (RPKM 232.8) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Bsdc1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (147083044..147113997)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141798918..141827091)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (147661618..147689766)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L35A, pseudogene 3 Neighboring gene zinc finger and BTB domain containing 8b Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 2 Neighboring gene small nuclear ribonucleoprotein G pseudogene Neighboring gene family with sequence similarity 229, member A Neighboring gene testis-specific serine kinase 3 Neighboring gene MARCKS-like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    BSD domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106636.1 → NP_001100106.1  BSD domain-containing protein 1

      See identical proteins and their annotated locations for NP_001100106.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473968
      UniProtKB/TrEMBL
      A0A8I6AS17, A6ISI9, D4A3M7
      Related
      ENSRNOP00000011054.7, ENSRNOT00000011054.8
      Conserved Domains (1) summary
      pfam03909
      Location:146 → 202
      BSD; BSD domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      147083044..147113997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063287288.1 → XP_063143358.1  BSD domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AS17

    2. XM_039109416.2 → XP_038965344.1  BSD domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AS17
      Conserved Domains (1) summary
      smart00751
      Location:148 → 198
      BSD; domain in transcription factors and synapse-associated proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials