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    C7h8orf33 similar to human chromosome 8 open reading frame 33 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681282, updated on 13-Apr-2024

    Summary

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    Official Symbol
    C7h8orf33provided by RGD
    Official Full Name
    similar to human chromosome 8 open reading frame 33provided by RGD
    Primary source
    RGD:1597990
    See related
    Ensembl:ENSRNOG00000034107 AllianceGenome:RGD:1597990
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C8orf33 (chromosome 8 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 82.4), Heart (RPKM 80.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C7h8orf33 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (110562735..110564985)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (108682122..108684372)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (118023363..118025621)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 647 Neighboring gene Zinc finger protein 16 like, pseudogene 1 Neighboring gene uncharacterized LOC134479933 Neighboring gene uncharacterized LOC134479931 Neighboring gene myoglobin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    hypothetical protein LOC681282
    Names
    UPF0488 protein C8orf33 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398982.1 → NP_001385911.1  hypothetical protein LOC681282 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      D3ZDG0
      Related
      ENSRNOP00000050313.4, ENSRNOT00000041750.5
      Conserved Domains (1) summary
      pfam15393
      Location:102 → 221
      DUF4615; Domain of unknown function (DUF4615)

    2. NM_001398983.1 → NP_001385912.1  hypothetical protein LOC681282 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A6HSE8
      Conserved Domains (1) summary
      pfam15393
      Location:40 → 159
      DUF4615; Domain of unknown function (DUF4615)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      110562735..110564985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases