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    Stfa2l2 stefin A2-like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498087, updated on 11-Apr-2024

    Summary

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    Symbol
    Stfa2l2provided by RGD
    Full Name
    stefin A2-like 2provided by RGD
    Primary source
    RGD:1560676
    See related
    Ensembl:ENSRNOG00000063669 AllianceGenome:RGD:1560676
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Stfa2l3; RGD1560676
    Expression
    Biased expression in Spleen (RPKM 8.5), Lung (RPKM 8.5) and 3 other tissues See more
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    Genomic context

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    See Stfa2l2 in Genome Data Viewer
    Location:
    11q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (78003490..78005912)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (64498151..64500576)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (67451583..67454007)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene cystatin domain containing 4 Neighboring gene U6 spliceosomal RNA Neighboring gene stefin-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    stefin A2-like 2; stefin-2
    Names
    stefin A2-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      78003490..78005912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006248415.5 → XP_006248477.2  stefin-2

      UniProtKB/TrEMBL
      A0A8I6GJV2
      Related
      ENSRNOP00000091715.1
      Conserved Domains (1) summary
      pfam00031
      Location:10 → 97
      Cystatin; Cystatin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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