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    Ssxb9 SSX member B9 [ Mus musculus (house mouse) ]

    Gene ID: 387131, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Ssxb9provided by MGI
    Official Full Name
    SSX member B9provided by MGI
    Primary source
    MGI:MGI:2446778
    See related
    Ensembl:ENSMUSG00000068218 AllianceGenome:MGI:2446778
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable transcription corepressor activity. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to several human genes including SSX1 (SSX family member 1); SSX2B (SSX family member 2B); and SSX3 (SSX family member 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Ssxb9 in Genome Data Viewer
    Location:
    X A1.1; X 3.79 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (8233217..8241627)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (8366978..8375388)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene solute carrier family 38, member 5 Neighboring gene SSX member B10 Neighboring gene STARR-seq mESC enhancer starr_46696 Neighboring gene SSX member B1 Neighboring gene SSX member B2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of mouse SSX genes: a multigene family on the X chromosome with restricted cancer/testis expression. Chen YT, et al. Genomics, 2003 Dec. PMID 14611804
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    synovial sarcoma, X member B, breakpoint 9
    Names
    synovial sarcoma, X member B9

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199066.2 → NP_951021.2  synovial sarcoma, X member B, breakpoint 9

      See identical proteins and their annotated locations for NP_951021.2

      Status: VALIDATED

      Source sequence(s)
      BX890632
      Consensus CDS
      CCDS29996.2
      UniProtKB/TrEMBL
      A2BI93, Q6XAR8
      Related
      ENSMUSP00000111247.3, ENSMUST00000115584.3
      Conserved Domains (1) summary
      cl02581
      Location:38 → 93
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      8233217..8241627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247479.1 → XP_011245781.1  synovial sarcoma, X member B, breakpoint 9 isoform X2

      See identical proteins and their annotated locations for XP_011245781.1

      UniProtKB/TrEMBL
      A2BI93, Q6XAR8
      Conserved Domains (1) summary
      cl02581
      Location:38 → 93
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_011247478.1 → XP_011245780.1  synovial sarcoma, X member B, breakpoint 9 isoform X1

      Conserved Domains (1) summary
      cl02581
      Location:38 → 93
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein Strain
    Heading Accession and Version

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