clptm1 CLPTM1 regulator of GABA type A receptor forward trafficking [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: clptm1provided by ZNC
Official Full Name: CLPTM1 regulator of GABA type A receptor forward traffickingprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040801-265
See related: Ensembl:ENSDARG00000018973 AllianceGenome:ZFIN:ZDB-GENE-040801-265
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb102; sb:cb102; zgc:100803
Summary: Predicted to act upstream of or within cell differentiation. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in immature eye; lens; mesoderm; pronephric duct; and somite. Orthologous to human CLPTM1 (CLPTM1 regulator of GABA type A receptor forward trafficking). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 15

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (17074183..17096331)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (17138161..17160309)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fd58f12.y1 (e-PCR)
- UniSTS:195730

AI721466 (e-PCR)
- UniSTS:206062

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in endomembrane system	IBA Inferred from Biological aspect of Ancestor more info
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: putative lipid scramblase CLPTM1

Names: cleft lip and palate associated transmembrane protein 1; cleft lip and palate transmembrane protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003647.2 → NP_001003647.2 putative lipid scramblase CLPTM1

Status: VALIDATED

Source sequence(s)

BX572630, CT635408, EB922774, EH507252

UniProtKB/Swiss-Prot

Q6DEL2

UniProtKB/TrEMBL

A0A8M1N1D8, F1R5K1

Related

ENSDARP00000046647.5, ENSDART00000046648.6

Conserved Domains (1) summary

pfam05602
Location:58 → 494

CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)