Myadm myeloid-associated differentiation marker [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Myadmprovided by RGD
Official Full Name: myeloid-associated differentiation markerprovided by RGD
Primary source: RGD:727835
See related: Ensembl:ENSRNOG00000053450 AllianceGenome:RGD:727835
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be involved in several processes, including negative regulation of heterotypic cell-cell adhesion; negative regulation of macromolecule metabolic process; and negative regulation of protein kinase C signaling. Predicted to be located in cortical actin cytoskeleton; membrane raft; and ruffle. Predicted to be active in cell-cell junction and plasma membrane. Orthologous to human MYADM (myeloid associated differentiation marker). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Lung (RPKM 206.2), Heart (RPKM 195.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q12

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (74779616..74796752, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (65864180..65874701, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (64438465..64448332, complement)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

RH133928 (e-PCR)
- UniSTS:217211

RH133954 (e-PCR)
- UniSTS:217211

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
NOT involved_in cell-cell junction maintenance	ISO Inferred from Sequence Orthology more info
involved_in establishment of endothelial barrier	IEA Inferred from Electronic Annotation more info
involved_in establishment of endothelial barrier	ISO Inferred from Sequence Orthology more info
involved_in membrane raft organization	IEA Inferred from Electronic Annotation more info
involved_in membrane raft organization	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of actin filament polymerization	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of actin filament polymerization	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of gene expression	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of gene expression	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of heterotypic cell-cell adhesion	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative regulation of heterotypic cell-cell adhesion	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of heterotypic cell-cell adhesion	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of protein kinase C signaling	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of protein kinase C signaling	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of protein phosphorylation	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of protein phosphorylation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of cell migration	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of cell migration	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of substrate adhesion-dependent cell spreading	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of substrate adhesion-dependent cell spreading	ISO Inferred from Sequence Orthology more info
involved_in protein localization to plasma membrane raft	IEA Inferred from Electronic Annotation more info
involved_in protein localization to plasma membrane raft	ISO Inferred from Sequence Orthology more info
NOT involved_in regulation of cell-substrate adhesion	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in cell-cell junction	IBA Inferred from Biological aspect of Ancestor more info
located_in cell-cell junction	IEA Inferred from Electronic Annotation more info
located_in cell-cell junction	ISO Inferred from Sequence Orthology more info
located_in cortical actin cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cortical actin cytoskeleton	ISO Inferred from Sequence Orthology more info
located_in membrane raft	IEA Inferred from Electronic Annotation more info
located_in membrane raft	ISO Inferred from Sequence Orthology more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info
located_in ruffle	IEA Inferred from Electronic Annotation more info
located_in ruffle	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: myeloid-associated differentiation marker

Names: myeloid up-regulated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_183332.1 → NP_899161.1 myeloid-associated differentiation marker

See identical proteins and their annotated locations for NP_899161.1

Status: PROVISIONAL

Source sequence(s)

AY344060

UniProtKB/Swiss-Prot

Q6VBQ5

Related

ENSRNOP00000095076.1, ENSRNOT00000117211.1

Conserved Domains (1) summary

pfam01284
Location:162 → 309

MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

74779616..74796752 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006228035.5 → XP_006228097.1 myeloid-associated differentiation marker isoform X1

See identical proteins and their annotated locations for XP_006228097.1

UniProtKB/TrEMBL

A0A0G2K8C4, A6KS43, Q05BA4

Related

ENSRNOP00000074552.1

Conserved Domains (1) summary

pfam01284
Location:162 → 309

MARVEL; Membrane-associating domain
XM_039085873.2 → XP_038941801.1 myeloid-associated differentiation marker isoform X1

UniProtKB/TrEMBL

A0A0G2K8C4, A6KS43, Q05BA4

Related

ENSRNOP00000094663.1

Conserved Domains (1) summary

pfam01284
Location:162 → 309

MARVEL; Membrane-associating domain
XM_063270027.1 → XP_063126097.1 myeloid-associated differentiation marker isoform X1

UniProtKB/TrEMBL

A0A0G2K8C4, A6KS43, Q05BA4