E2f5 E2F transcription factor 5 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: E2f5provided by MGI
Official Full Name: E2F transcription factor 5provided by MGI
Primary source: MGI:MGI:105091
See related: Ensembl:ENSMUSG00000027552 AllianceGenome:MGI:105091
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: E2F-5
Summary: Enables DNA-binding transcription factor activity. Acts upstream of or within animal organ morphogenesis and regulation of transcription, DNA-templated. Located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; early conceptus; future brain; genitourinary system; and neural retina. Used to study hydrocephalus. Orthologous to human E2F5 (E2F transcription factor 5). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in ovary adult (RPKM 13.0), CNS E11.5 (RPKM 11.8) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 3 A1; 3 3.1 cM

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	3	NC_000069.7 (14638370..14671369)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	3	NC_000069.6 (14578602..14606309)

Chromosome 3 - NC_000069.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

E2f4 and E2f5 display overlapping roles in controlling the normal development of the male reproductive system.
Title: E2f4 and E2f5 are essential for the development of the male reproductive system.
Results indicate that Raf-arrested myoblasts may serve as a model system for satellite cell cycle studies and that E2F5 and LEK1 translocation to the nucleus is an important first step during entry into quiescence.
Title: E2F5 and LEK1 translocation to the nucleus is an early event demarcating myoblast quiescence.
This study investigated if the distribution between nucleus and cytoplasm of the transcription factors E2F4 and E2F5 is mediated by pRb2/p130 and if the presence of JCV T-antigen may impair this shuttling by sequestering pRb2/p130.
Title: Interplay between the retinoblastoma related pRb2/p130 and E2F-4 and -5 in relation to JCV-TAg.
E2F5 protein is down-regulated late in embryogenesis
Title: Changes in E2F5 intracellular localization in mouse and human choroid plexus epithelium with development.
E2F3a and E2F4, but not E2F5, function to induce cell cycle entry, although E2F4 has more modest activity. E2F3a may induce cell death primarily through activation of p73alpha.
Title: Distinct capacities of individual E2Fs to induce cell cycle re-entry in postmitotic lens fiber cells of transgenic mice.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (1) 1 citation
Endonuclease-mediated (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

AU024671 (e-PCR)
- UniSTS:178806

X86925 (e-PCR)
- UniSTS:125881

E2f5 (e-PCR), detects polymorphism
- UniSTS:527321

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription activator activity	ISO Inferred from Sequence Orthology more info
enables DNA-binding transcription factor activity	IDA Inferred from Direct Assay more info	PubMed
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info
enables sequence-specific DNA binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within G1/S transition of mitotic cell cycle	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within animal organ morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within cell projection organization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within regulation of cell cycle	TAS Traceable Author Statement more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of RNA polymerase II transcription regulator complex	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in fibrillar center	ISO Inferred from Sequence Orthology more info
located_in intracellular membrane-bounded organelle	ISO Inferred from Sequence Orthology more info
located_in nuclear envelope	TAS Traceable Author Statement more info	PubMed
located_in nucleolus	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	TAS Traceable Author Statement more info
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in sarcoplasm	ISO Inferred from Sequence Orthology more info
part_of transcription regulator complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transcription factor E2F5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_007892.3 → NP_031918.2 transcription factor E2F5

See identical proteins and their annotated locations for NP_031918.2

Status: VALIDATED

Source sequence(s)

AC140350

Consensus CDS

CCDS38391.1

UniProtKB/Swiss-Prot

Q61502, Q99LK0

UniProtKB/TrEMBL

E9Q011

Related

ENSMUSP00000029069.7, ENSMUST00000029069.13

Conserved Domains (3) summary

cd14660
Location:118 → 222

E2F_DD; Dimerization domain of E2F transcription factors

pfam02319
Location:42 → 106

E2F_TDP; E2F/DP family winged-helix DNA-binding domain

pfam12764
Location:7 → 60

Gly-rich_Ago1; Glycine-rich region of argonaut

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000069.7 Reference GRCm39 C57BL/6J

Range

14638370..14671369

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006530051.4 → XP_006530114.1 transcription factor E2F5 isoform X1

Conserved Domains (1) summary

cd14660
Location:1 → 71

E2F_DD; Dimerization domain of E2F transcription factors