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    Ccna2 cyclin A2 [ Mus musculus (house mouse) ]

    Gene ID: 12428, updated on 21-Apr-2024

    Summary

    Official Symbol
    Ccna2provided by MGI
    Official Full Name
    cyclin A2provided by MGI
    Primary source
    MGI:MGI:108069
    See related
    Ensembl:ENSMUSG00000027715 AllianceGenome:MGI:108069
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccn1; Ccna; Cyca; Ccn-1; CycA2
    Summary
    Enables protein kinase binding activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Located in cytoplasm; female pronucleus; and male pronucleus. Part of cyclin A2-CDK2 complex. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and sensory organ. Orthologous to human CCNA2 (cyclin A2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in liver E14 (RPKM 91.0), liver E14.5 (RPKM 83.6) and 15 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    3 B; 3 17.67 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (36619014..36627187, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (36564865..36573038, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 43 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene exosome component 9 Neighboring gene STARR-positive B cell enhancer ABC_E2068 Neighboring gene Bardet-Biedl syndrome 7 Neighboring gene STARR-seq mESC enhancer starr_07426 Neighboring gene transient receptor potential cation channel, subfamily C, member 3 Neighboring gene predicted gene, 35856

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase regulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cyclin-dependent protein serine/threonine kinase regulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of DNA-templated transcription IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in G1/S transition of mitotic cell cycle NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in G2/M transition of mitotic cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in G2/M transition of mitotic cell cycle NAS
    Non-traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell cycle G1/S phase transition ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mitotic cell cycle phase transition IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of DNA biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of fibroblast proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in post-translational protein modification ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of DNA replication ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of cyclin A2-CDK1 complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of cyclin A2-CDK2 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of cyclin A2-CDK2 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of cyclin A2-CDK2 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cyclin-dependent protein kinase holoenzyme complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in female pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in male pronucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    cyclin-A2
    Names
    Cyclin A2 (Cyclin A)
    cyclin-A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009828.3NP_033958.2  cyclin-A2

      See identical proteins and their annotated locations for NP_033958.2

      Status: VALIDATED

      Source sequence(s)
      AC117584, AK044924, BC052730
      Consensus CDS
      CCDS17313.1
      UniProtKB/Swiss-Prot
      P51943, Q61459, Q8BRG1
      Related
      ENSMUSP00000029270.4, ENSMUST00000029270.10
      Conserved Domains (3) summary
      pfam00134
      Location:171297
      Cyclin_N; Cyclin, N-terminal domain
      pfam02984
      Location:299417
      Cyclin_C; Cyclin, C-terminal domain
      pfam16500
      Location:22152
      Cyclin_N2; N-terminal region of cyclin_N

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      36619014..36627187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)