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    Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [ Mus musculus (house mouse) ]

    Gene ID: 72289, updated on 5-Sep-2021

    Summary

    Official Symbol
    Malat1provided by MGI
    Official Full Name
    metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)provided by MGI
    Primary source
    MGI:MGI:1919539
    See related
    Ensembl:ENSMUSG00000092341
    Gene type
    ncRNA
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NEA; Neat2; AI647968; 2210401K01Rik; 9430072K23Rik
    Summary
    This gene produces a long non-coding RNA that is cleaved into a mature, functional transcript as well as a small cytoplasmic RNA (mascRNA). The mature transcript is stabilized by a 3' triple helical structure and is retained in the nucleus. This transcript functions in the regulation of gene expression and proliferation and may be upregulated in tumors. [provided by RefSeq, Nov 2016]
    Orthologs
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    Genomic context

    See Malat1 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5845718..5852700, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5795690..5802672, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (5795690..5802671, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene zinc ribbon domain containing 2 Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene SCY1-like 1 (S. cerevisiae) Neighboring gene Malat1-associated small cytoplasmic RNA Neighboring gene nuclear paraspeckle assembly transcript 1 (non-protein coding) Neighboring gene FERM domain containing 8, opposite strand Neighboring gene FERM domain containing 8

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002847.3 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AK028133, EF177380
      Related
      ENSMUST00000172812.3

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      5845718..5852700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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