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    Ccn5 cellular communication network factor 5 [ Mus musculus (house mouse) ]

    Gene ID: 22403, updated on 11-Apr-2024

    Summary

    Official Symbol
    Ccn5provided by MGI
    Official Full Name
    cellular communication network factor 5provided by MGI
    Primary source
    MGI:MGI:1328326
    See related
    Ensembl:ENSMUSG00000027656 AllianceGenome:MGI:1328326
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Crgr4; Ctgfl; Rcop1; Wisp2
    Summary
    Predicted to enable growth factor activity; heparin binding activity; and integrin binding activity. Acts upstream of or within regulation of cell growth. Located in extracellular space; nucleus; and plasma membrane. Is expressed in several structures, including early conceptus; embryo endoderm; embryo mesoderm; gut; and reproductive system. Orthologous to human CCN5 (cellular communication network factor 5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in lung adult (RPKM 28.7), ovary adult (RPKM 25.3) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    2 H3; 2 84.49 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (163662724..163675066)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (163820752..163833146)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene protein kinase inhibitor, gamma Neighboring gene predicted gene 16316 Neighboring gene adenosine deaminase intronic regulatory elements Neighboring gene adenosine deaminase upstream regulatory elements Neighboring gene adenosine deaminase Neighboring gene potassium channel, subfamily K, member 15 Neighboring gene regulating synaptic membrane exocytosis 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables growth factor activity ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    enables heparin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables integrin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables integrin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within regulation of cell growth IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space HDA PubMed 
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in podosome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    CCN family member 5
    Names
    CTGF-L
    WISP-2
    WNT1 inducible signaling pathway protein 2
    connective tissue growth factor-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016873.2NP_058569.2  CCN family member 5 precursor

      See identical proteins and their annotated locations for NP_058569.2

      Status: VALIDATED

      Source sequence(s)
      AL731698, BC032877, BQ560868
      Consensus CDS
      CCDS17016.1
      UniProtKB/Swiss-Prot
      Q8CIC8, Q9Z0G4
      UniProtKB/TrEMBL
      A2AHD1
      Related
      ENSMUSP00000029188.8, ENSMUST00000029188.8
      Conserved Domains (2) summary
      smart00214
      Location:100159
      VWC; von Willebrand factor (vWF) type C domain
      pfam00219
      Location:2678
      IGFBP; Insulin-like growth factor binding protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      163662724..163675066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499169.4XP_006499232.1  CCN family member 5 isoform X1

      Conserved Domains (2) summary
      cl17735
      Location:100159
      VWC; von Willebrand factor type C domain
      pfam00219
      Location:2678
      IGFBP; Insulin-like growth factor binding protein