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    Sdr9c7 4short chain dehydrogenase/reductase family 9C, member 7 [ Mus musculus (house mouse) ]

    Gene ID: 70061, updated on 23-Jun-2021

    Summary

    Official Symbol
    Sdr9c7provided by MGI
    Official Full Name
    4short chain dehydrogenase/reductase family 9C, member 7provided by MGI
    Primary source
    MGI:MGI:1917311
    See related
    Ensembl:ENSMUSG00000040127
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S; Rd; SD; Rdh2; Rdhs; Sdro; Rdh20; SDR-O; 1810054F20Rik
    Expression
    Biased expression in liver adult (RPKM 5.3), stomach adult (RPKM 2.3) and 2 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Sdr9c7 in Genome Data Viewer
    Location:
    10; 10 D3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127734404..127747630)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127898535..127911761)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127335591..127348817)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RDH16 family member 2 Neighboring gene predicted gene, 31091 Neighboring gene retinol dehydrogenase 7 Neighboring gene predicted gene, 40804 Neighboring gene predicted gene, 40805 Neighboring gene ecotropic viral integration site 5 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables NAD-retinol dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    short-chain dehydrogenase/reductase family 9C member 7
    Names
    RDH-S
    orphan short chain dehydrogenase/reductase
    retinol dehydrogenase 20
    NP_081577.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027301.3NP_081577.1  short-chain dehydrogenase/reductase family 9C member 7

      See identical proteins and their annotated locations for NP_081577.1

      Status: VALIDATED

      Source sequence(s)
      BC064820
      Consensus CDS
      CCDS24256.1
      UniProtKB/Swiss-Prot
      Q8K3P0
      Related
      ENSMUSP00000036628.8, ENSMUST00000047134.8
      Conserved Domains (2) summary
      cd09805
      Location:26302
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
      pfam00106
      Location:26207
      adh_short; short chain dehydrogenase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      127734404..127747630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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