Nup210l nucleoporin 210-like [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Nup210lprovided by MGI
Official Full Name: nucleoporin 210-likeprovided by MGI
Primary source: MGI:MGI:1924845
See related: Ensembl:ENSMUSG00000027939 AllianceGenome:MGI:1924845
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: R26-EGFP; 4930548O11Rik; Tg(Gt(ROSA)26Sor-EGFP)130910Eps
Summary: Acts upstream of or within Sertoli cell development and spermatid development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of nuclear pore. Orthologous to human NUP210L (nucleoporin 210 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in testis adult (RPKM 14.1) and CNS E11.5 (RPKM 0.7) See more
Orthologs: human all
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Genomic context

Location:: 3 F1; 3 39.2 cM

Exon count:: 40

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	3	NC_000069.7 (90011445..90119458)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	3	NC_000069.6 (90101007..90212151)

Chromosome 3 - NC_000069.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Spermatozoa in mice lacking the nucleoporin NUP210L show defects in head shape and motility but not in nuclear compaction or histone replacement.
Title: Spermatozoa in mice lacking the nucleoporin NUP210L show defects in head shape and motility but not in nuclear compaction or histone replacement.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Transgenic (1) 1 citation

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within Sertoli cell development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within spermatid development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
part_of nuclear pore	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: nuclear pore membrane glycoprotein 210-like

Names: nucleoporin 210 kDa-like; nucleoporin Nup210-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_029937.2 → NP_084213.1 nuclear pore membrane glycoprotein 210-like precursor

See identical proteins and their annotated locations for NP_084213.1

Status: VALIDATED

Source sequence(s)

AC119825, AC121963, AC163616

Consensus CDS

CCDS50969.1

UniProtKB/Swiss-Prot

Q9D2F7

UniProtKB/TrEMBL

A0A0G2JFZ8

Related

ENSMUSP00000029548.5, ENSMUST00000029548.9

Conserved Domains (2) summary

pfam02368
Location:1079 → 1153

Big_2; Bacterial Ig-like domain (group 2)

cl02708
Location:476 → 523

Big_2; Bacterial Ig-like domain (group 2)