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    Krtcap3 keratinocyte associated protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 69815, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Krtcap3provided by MGI
    Official Full Name
    keratinocyte associated protein 3provided by MGI
    Primary source
    MGI:MGI:1917065
    See related
    Ensembl:ENSMUSG00000029149 AllianceGenome:MGI:1917065
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kcp3; 2010001C09Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human KRTCAP3 (keratinocyte associated protein 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in colon adult (RPKM 123.5), duodenum adult (RPKM 73.7) and 15 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    5 B1; 5 17.27 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (31409050..31410541)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (31251670..31253202)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform Neighboring gene STARR-seq mESC enhancer starr_12768 Neighboring gene predicted gene 9970 Neighboring gene nuclear receptor binding protein 1 Neighboring gene intraflagellar transport 172 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:31593577-31593686 Neighboring gene fibronectin type III domain containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC129450, MGC129451

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    keratinocyte-associated protein 3
    Names
    KCP-3
    keratinocytes associated protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001363337.1 → NP_001350266.1  keratinocyte-associated protein 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      AC114619
      Consensus CDS
      CCDS51459.1
      UniProtKB/Swiss-Prot
      Q8K177, Q9D8I7
      UniProtKB/TrEMBL
      I6L973
      Related
      ENSMUSP00000144464.2, ENSMUST00000201937.4
      Conserved Domains (1) summary
      pfam12304
      Location:19 → 206
      BCLP; Beta-casein like protein

    2. NM_027221.3 → NP_081497.2  keratinocyte-associated protein 3

      See identical proteins and their annotated locations for NP_081497.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      BC107024, BQ033219, CK129285
      Consensus CDS
      CCDS51459.1
      UniProtKB/Swiss-Prot
      Q8K177, Q9D8I7
      UniProtKB/TrEMBL
      I6L973
      Related
      ENSMUSP00000060414.8, ENSMUST00000054829.13
      Conserved Domains (1) summary
      pfam12304
      Location:19 → 206
      BCLP; Beta-casein like protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      31409050..31410541
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8K177.2 GenPept UniProtKB/Swiss-Prot:Q8K177

    Gene LinkOut

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