Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Swi5 SWI5 recombination repair homolog (yeast) [ Mus musculus (house mouse) ]

    Gene ID: 72931, updated on 23-Jun-2021

    Summary

    Official Symbol
    Swi5provided by MGI
    Official Full Name
    SWI5 recombination repair homolog (yeast)provided by MGI
    Primary source
    MGI:MGI:1920181
    See related
    Ensembl:ENSMUSG00000044627
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI046671; 1500019F05Rik; 2900010J23Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 100.7), adrenal adult (RPKM 74.9) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Swi5 in Genome Data Viewer
    Location:
    2; 2 B
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (32168817..32178154, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (32278805..32288136, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (32134336..32143588, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene protein-O-mannosyltransferase 1 Neighboring gene uridine-cytidine kinase 1 Neighboring gene 60S ribosomal protein L36 pseudogene Neighboring gene golgi autoantigen, golgin subfamily a, 2 Neighboring gene dynamin 1 Neighboring gene microRNA 3154

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of Swi5-Sfr1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of Swi5-Sfr1 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of Swi5-Sfr1 complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of Swi5-Swi2 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    DNA repair protein SWI5 homolog
    Names
    protein SAE3 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290552.1NP_001277481.1  DNA repair protein SWI5 homolog isoform a

      See identical proteins and their annotated locations for NP_001277481.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a).
      Source sequence(s)
      AK013517, AL808027, BY611716
      Consensus CDS
      CCDS71026.1
      UniProtKB/Swiss-Prot
      Q8K3D3
      Related
      ENSMUSP00000109027.3, ENSMUST00000113400.3
      Conserved Domains (1) summary
      pfam07061
      Location:47119
      Swi5; Swi5
    2. NM_175190.5NP_780399.1  DNA repair protein SWI5 homolog isoform b

      See identical proteins and their annotated locations for NP_780399.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 5' terminal exon, and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
      Source sequence(s)
      AK013517, AL808027, BY611716
      Consensus CDS
      CCDS50566.1
      UniProtKB/Swiss-Prot
      Q8K3D3
      UniProtKB/TrEMBL
      E3WH32
      Related
      ENSMUSP00000139299.2, ENSMUST00000183946.8
      Conserved Domains (1) summary
      pfam07061
      Location:1587
      Swi5; Swi5

    RNA

    1. NR_110965.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate 5' terminal exon and lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AK018775, AL808027, BY611716
      Related
      ENSMUST00000113397.9

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      32168817..32178154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_374118.5 RNA Sequence

      Related
      ENSMUST00000140406.8
    Support Center