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    Leng9 leukocyte receptor cluster (LRC) member 9 [ Mus musculus (house mouse) ]

    Gene ID: 243813, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Leng9provided by MGI
    Official Full Name
    leukocyte receptor cluster (LRC) member 9provided by MGI
    Primary source
    MGI:MGI:2444509
    See related
    Ensembl:ENSMUSG00000043432 AllianceGenome:MGI:2444509
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9530024C23Rik; F630035L11Rik
    Summary
    Predicted to enable metal ion binding activity. Is expressed in several structures, including cranial ganglion; early conceptus; oocyte; telencephalon; and vibrissa. Orthologous to human LENG9 (leukocyte receptor cluster member 9). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Leng9 in Genome Data Viewer
    Location:
    7 A1; 7 2.39 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (4151182..4152871, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (4148183..4149872, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene tweety family member 1 Neighboring gene RIKEN cDNA D030047H15 gene Neighboring gene leukocyte receptor cluster (LRC) member 8 Neighboring gene STARR-positive B cell enhancer ABC_E8149 Neighboring gene STARR-seq mESC enhancer starr_17920 Neighboring gene CDC42 effector protein 5 Neighboring gene calcium binding protein 39 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide survey and expression profiling of CCCH-zinc finger family reveals a functional module in macrophage activation. Liang J, et al. PLoS One, 2008 Aug 6. PMID 18682727, Free PMC Article
    2. Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters. Nabeshima R, et al. Elife, 2018 Aug 2. PMID 30070635, Free PMC Article
    3. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Guo G, et al. Dev Cell, 2010 Apr 20. PMID 20412781
    4. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    leukocyte receptor cluster member 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175529.3 → NP_780738.1  leukocyte receptor cluster member 9

      See identical proteins and their annotated locations for NP_780738.1

      Status: PROVISIONAL

      Source sequence(s)
      AK089196
      Consensus CDS
      CCDS20732.1
      UniProtKB/Swiss-Prot
      Q3UYM5, Q8BTG8, Q8BTN6
      Related
      ENSMUSP00000061079.7, ENSMUST00000058358.8
      Conserved Domains (3) summary
      smart00356
      Location:11 → 33
      ZnF_C3H1; zinc finger
      pfam04457
      Location:77 → 128
      DUF504; Protein of unknown function (DUF504)
      pfam10469
      Location:305 → 484
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      4151182..4152871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8BTN6.1 GenPept UniProtKB/Swiss-Prot:Q8BTN6

    Gene LinkOut

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