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    Rdh16f2 RDH16 family member 2 [ Mus musculus (house mouse) ]

    Gene ID: 216454, updated on 6-May-2021

    Summary

    Official Symbol
    Rdh16f2provided by MGI
    Official Full Name
    RDH16 family member 2provided by MGI
    Primary source
    MGI:MGI:3583955
    See related
    Ensembl:ENSMUSG00000074639
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CRAD-L
    Expression
    Biased expression in kidney adult (RPKM 164.0) and liver adult (RPKM 115.7) See more
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    Genomic context

    See Rdh16f2 in Genome Data Viewer
    Location:
    10; 10 D3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127702345..127713188)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127866476..127877319)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127303532..127314375)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 18, pseudogene Neighboring gene retinol dehydrogenase 19 Neighboring gene predicted gene, 31091 Neighboring gene retinol dehydrogenase 7 Neighboring gene 4short chain dehydrogenase/reductase family 9C, member 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107618

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables androstan-3-alpha,17-beta-diol dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables androsterone dehydrogenase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of organelle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145424.2NP_663399.2  cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like precursor

      See identical proteins and their annotated locations for NP_663399.2

      Status: VALIDATED

      Source sequence(s)
      AI099357, AK144071, AY053572
      Consensus CDS
      CCDS24254.1
      UniProtKB/TrEMBL
      Q8K3M0, Q8K3M1
      Related
      ENSMUSP00000089691.4, ENSMUST00000092058.4
      Conserved Domains (2) summary
      cd09805
      Location:30307
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
      pfam00106
      Location:30219
      adh_short; short chain dehydrogenase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      127702345..127713188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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