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    Tex29 testis expressed 29 [ Mus musculus (house mouse) ]

    Gene ID: 75528, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tex29provided by MGI
    Official Full Name
    testis expressed 29provided by MGI
    Primary source
    MGI:MGI:1922778
    See related
    Ensembl:ENSMUSG00000031512 AllianceGenome:MGI:1922778
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700018L24Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in testis. Orthologous to human TEX29 (testis expressed 29). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 30.1) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    8 A1.1; 8 5.73 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (11890488..11905761)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (11840487..11855761)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700128E19 gene Neighboring gene predicted gene 45420 Neighboring gene STARR-positive B cell enhancer ABC_E9719 Neighboring gene Rho guanine nucleotide exchange factor Neighboring gene NSA2 ribosome biogenesis homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_20727 Neighboring gene STARR-seq mESC enhancer starr_20728 Neighboring gene STARR-seq mESC enhancer starr_20729 Neighboring gene STARR-seq mESC enhancer starr_20730 Neighboring gene high mobility group box 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20731 Neighboring gene STARR-seq mESC enhancer starr_20732 Neighboring gene predicted gene, 33029

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 29
    Names
    testis-expressed sequence 29 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029326.1 → NP_083602.1  testis-expressed protein 29

      See identical proteins and their annotated locations for NP_083602.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049746
      Consensus CDS
      CCDS22100.1
      UniProtKB/Swiss-Prot
      Q9DA77
      Related
      ENSMUSP00000033909.8, ENSMUST00000033909.14
      Conserved Domains (1) summary
      pfam15839
      Location:20 → 88
      TEX29; Testis-expressed sequence 29 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      11890488..11905761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508920.3 → XP_006508983.1  testis-expressed protein 29 isoform X2

      See identical proteins and their annotated locations for XP_006508983.1

      UniProtKB/Swiss-Prot
      Q9DA77
      Conserved Domains (1) summary
      pfam15839
      Location:20 → 88
      TEX29; Testis-expressed sequence 29 protein

    2. XM_006508918.3 → XP_006508981.1  testis-expressed protein 29 isoform X1

      See identical proteins and their annotated locations for XP_006508981.1

      UniProtKB/TrEMBL
      A0A1B0GSS2
      Related
      ENSMUSP00000148049.2, ENSMUST00000209692.2
      Conserved Domains (1) summary
      pfam15839
      Location:38 → 106
      TEX29; Testis-expressed sequence 29 protein

    3. XM_006508919.3 → XP_006508982.1  testis-expressed protein 29 isoform X1

      See identical proteins and their annotated locations for XP_006508982.1

      UniProtKB/TrEMBL
      A0A1B0GSS2
      Conserved Domains (1) summary
      pfam15839
      Location:38 → 106
      TEX29; Testis-expressed sequence 29 protein

    4. XM_030243828.2 → XP_030099688.1  testis-expressed protein 29 isoform X1

      UniProtKB/TrEMBL
      A0A1B0GSS2
      Conserved Domains (1) summary
      pfam15839
      Location:38 → 106
      TEX29; Testis-expressed sequence 29 protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DA77.1 GenPept UniProtKB/Swiss-Prot:Q9DA77

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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