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    Ccdc180 coiled-coil domain containing 180 [ Mus musculus (house mouse) ]

    Gene ID: 381522, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ccdc180provided by MGI
    Official Full Name
    coiled-coil domain containing 180provided by MGI
    Primary source
    MGI:MGI:2685871
    See related
    Ensembl:ENSMUSG00000035539 AllianceGenome:MGI:2685871
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1025; E230008N13Rik
    Summary
    Is expressed in brain and reproductive system. Orthologous to human CCDC180 (coiled-coil domain containing 180). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 7.2), lung adult (RPKM 0.8) and 1 other tissue See more
    Orthologs
    human all
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    Genomic context

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    Location:
    4 B1; 4 24.42 cM
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (45890303..45950774)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (45890303..45950774)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family, member B1 Neighboring gene insulin-like growth factor binding protein-like 1 Neighboring gene STARR-seq mESC enhancer starr_10113 Neighboring gene STARR-seq mESC enhancer starr_10114 Neighboring gene STRA6-like Neighboring gene tudor domain containing 7 Neighboring gene tropomodulin 1 Neighboring gene predicted gene, 52729

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 180

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198660.2 → NP_941062.2  coiled-coil domain-containing protein 180

      Status: PROVISIONAL

      Source sequence(s)
      AL772381
      Consensus CDS
      CCDS57275.1
      UniProtKB/TrEMBL
      F6QNN0, J3QNE4
      Related
      ENSMUSP00000136714.2, ENSMUST00000178561.8
      Conserved Domains (3) summary
      pfam04497
      Location:1009 → 1101
      Pox_E2-like; Poxviridae protein
      pfam14643
      Location:148 → 616
      DUF4455; Domain of unknown function (DUF4455)
      pfam14644
      Location:1346 → 1543
      DUF4456; Domain of unknown function (DUF4456)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      45890303..45950774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320287.2 → XP_017175776.1  coiled-coil domain-containing protein 180 isoform X1

      UniProtKB/TrEMBL
      F6QNN0
      Conserved Domains (2) summary
      pfam14643
      Location:148 → 616
      DUF4455; Domain of unknown function (DUF4455)
      pfam14644
      Location:1317 → 1521
      DUF4456; Domain of unknown function (DUF4456)

    2. XM_017320289.1 → XP_017175778.1  coiled-coil domain-containing protein 180 isoform X2

      Conserved Domains (1) summary
      pfam14643
      Location:148 → 616
      DUF4455; Domain of unknown function (DUF4455)

    3. XM_017320290.1 → XP_017175779.1  coiled-coil domain-containing protein 180 isoform X3

      Conserved Domains (1) summary
      pfam14643
      Location:148 → 616
      DUF4455; Domain of unknown function (DUF4455)

    4. XM_017320291.2 → XP_017175780.1  coiled-coil domain-containing protein 180 isoform X4

      Conserved Domains (1) summary
      pfam14643
      Location:148 → 616
      DUF4455; Domain of unknown function (DUF4455)

    RNA

    1. XR_004941930.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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