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    Chac1 ChaC, cation transport regulator 1 [ Mus musculus (house mouse) ]

    Gene ID: 69065, updated on 11-Apr-2024

    Summary

    Official Symbol
    Chac1provided by MGI
    Official Full Name
    ChaC, cation transport regulator 1provided by MGI
    Primary source
    MGI:MGI:1916315
    See related
    Ensembl:ENSMUSG00000027313 AllianceGenome:MGI:1916315
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810008K03Rik
    Summary
    Enables Notch binding activity. Involved in neurogenesis. Located in trans-Golgi network. Is expressed in embryo. Orthologous to human CHAC1 (ChaC glutathione specific gamma-glutamylcyclotransferase 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in stomach adult (RPKM 8.7), mammary gland adult (RPKM 8.4) and 23 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    Location:
    2 E5; 2 59.97 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (119181723..119184807)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (119351242..119354326)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 52558 Neighboring gene predicted gene 14207 Neighboring gene STARR-positive B cell enhancer ABC_E4493 Neighboring gene delta like canonical Notch ligand 4 Neighboring gene STARR-positive B cell enhancer ABC_E1251 Neighboring gene INO80 complex subunit Neighboring gene STARR-seq mESC enhancer starr_05481 Neighboring gene STARR-positive B cell enhancer ABC_E5969 Neighboring gene STARR-seq mESC enhancer starr_05483 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:119303641-119303888 Neighboring gene predicted gene, 33412 Neighboring gene cyclin-dependent kinase 12 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables Notch binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables glutathione specific gamma-glutamylcyclotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables glutathione specific gamma-glutamylcyclotransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    glutathione-specific gamma-glutamylcyclotransferase 1
    Names
    ChaC, cation transport regulator-like 1
    blocks Notch protein
    botch
    cation transport regulator-like protein 1
    gamma-GCG 1
    NP_081205.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026929.4NP_081205.1  glutathione-specific gamma-glutamylcyclotransferase 1

      See identical proteins and their annotated locations for NP_081205.1

      Status: VALIDATED

      Source sequence(s)
      AK007378, BI872476, BM899230
      Consensus CDS
      CCDS16601.1
      UniProtKB/Swiss-Prot
      A2AV63, Q8R3J5, Q9D944
      Related
      ENSMUSP00000028780.4, ENSMUST00000028780.4
      Conserved Domains (1) summary
      pfam04752
      Location:34209
      ChaC; ChaC-like protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      119181723..119184807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)