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    TXLNGY taxilin gamma Y-linked (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 246126, updated on 10-Oct-2023

    Summary

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    Official Symbol
    TXLNGYprovided by HGNC
    Official Full Name
    taxilin gamma Y-linked (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:18473
    See related
    Ensembl:ENSG00000291033 MIM:400031; AllianceGenome:HGNC:18473
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TXLNG2P; CYorf15A; CYorf15B
    Summary
    Predicted to enable syntaxin binding activity. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in prostate (RPKM 7.9), small intestine (RPKM 4.8) and 18 other tissues See more
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    Genomic context

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    Location:
    Yq11.222-q11.223
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (19567358..19607170)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (20473918..20513732)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (21729244..21769056)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene BCL6 corepressor pseudogene 1 Neighboring gene BCL-6 corepressor-like Neighboring gene uncharacterized LOC105377223 Neighboring gene lysine demethylase 5D Neighboring gene uncharacterized LOC105377224

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee. Hughes JF, et al. Nature, 2005 Sep 1. PMID 16136134
    2. The full-ORF clone resource of the German cDNA Consortium. Bechtel S, et al. BMC Genomics, 2007 Oct 31. PMID 17974005, Free PMC Article
    3. Identification of genes related to Parkinson's disease using expressed sequence tags. Kim JM, et al. DNA Res, 2006 Dec 31. PMID 17213182
    4. Dependence of Human Colorectal Cells Lacking the FBW7 Tumor Suppressor on the Spindle Assembly Checkpoint. Bailey ML, et al. Genetics, 2015 Nov. PMID 26354767, Free PMC Article
    5. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. Prakash T, et al. PLoS One, 2010 Oct 12. PMID 20967262, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • lipopolysaccaride-specific response 5-like protein
    • taxilin gamma 2, pseudogene
    • taxilin gamma pseudogene, Y-linked

    Clone Names

    • FLJ33216, MGC21662, MGC131732, DKFZp451G0616

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045128.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and spans the full extent of this pseudogene. There are no full-length transcripts representing this exon combination; it is predicted based on partial transcript alignments and on full-length alignments from the functional gene, GeneID:55787.
      Source sequence(s)
      AC009977, AC010889, AI828041, BM263181, CD242693, FY211499

    2. NR_045129.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks several 3' exons but contains an alternate 3' exon, compared to variant 1.
      Source sequence(s)
      AI129169, BM263181
      Related
      ENST00000447520.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      19567358..19607170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      20473918..20513732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001005852.2: Suppressed sequence

      Description
      NM_001005852.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9BZA5.3 GenPept UniProtKB/Swiss-Prot:Q9BZA5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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