U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Spink1 serine peptidase inhibitor, Kazal type 1 [ Mus musculus (house mouse) ]

    Gene ID: 20730, updated on 21-Apr-2024

    Summary

    Official Symbol
    Spink1provided by MGI
    Official Full Name
    serine peptidase inhibitor, Kazal type 1provided by MGI
    Primary source
    MGI:MGI:106202
    See related
    Ensembl:ENSMUSG00000024503 AllianceGenome:MGI:106202
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p12; Spink3
    Summary
    Enables serine-type endopeptidase inhibitor activity. Acts upstream of or within several processes, including negative regulation of cellular protein metabolic process; negative regulation of nitric oxide mediated signal transduction; and regulation of calcium ion transport. Located in extracellular space. Is expressed in embryo ectoderm; embryo endoderm; genitourinary system; gut; and yolk sac. Human ortholog(s) of this gene implicated in pancreatitis. Orthologous to human SPINK1 (serine peptidase inhibitor Kazal type 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in kidney adult (RPKM 309.1), placenta adult (RPKM 259.9) and 7 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    18 B3; 18 23.47 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (43861134..43870302, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (43728069..43737237, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3650 Neighboring gene eukaryotic translation initiation factor 3, subunit J2 Neighboring gene janus kinase and microtubule interacting protein 2 Neighboring gene STARR-seq mESC enhancer starr_44453 Neighboring gene STARR-seq mESC enhancer starr_44454 Neighboring gene secretoglobin, family 3A, member 2 Neighboring gene predicted gene 94

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (4)  1 citation
    • Endonuclease-mediated (4) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC107555

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    serine protease inhibitor Kazal-type 1
    Names
    prostatic secretory glycoprotein
    serine peptidase inhibitor, Kazal type 3
    serine protease inhibitor Kazal-type 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009258.5NP_033284.1  serine protease inhibitor Kazal-type 1 precursor

      See identical proteins and their annotated locations for NP_033284.1

      Status: VALIDATED

      Source sequence(s)
      AV048854, CA481615
      Consensus CDS
      CCDS37803.1
      UniProtKB/Swiss-Prot
      P09036, Q5M9M3
      Related
      ENSMUSP00000025381.3, ENSMUST00000025381.4
      Conserved Domains (1) summary
      cd01327
      Location:3980
      KAZAL_PSTI; Kazal-type pancreatic secretory trypsin inhibitors (PSTI) and related proteins, including the second domain of the ovomucoid turkey inhibitor and the C-terminal domain of the esophagus cancer-related gene-2 protein (ECRG-2), are members of the ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      43861134..43870302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)