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    Vgll1 vestigial like family member 1 [ Mus musculus (house mouse) ]

    Gene ID: 170828, updated on 20-Jul-2021

    Summary

    Official Symbol
    Vgll1provided by MGI
    Official Full Name
    vestigial like family member 1provided by MGI
    Primary source
    MGI:MGI:2655768
    See related
    Ensembl:ENSMUSG00000031131
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ton; Tondu
    Expression
    Biased expression in placenta adult (RPKM 2.1), bladder adult (RPKM 0.1) and 1 other tissue See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Vgll1 in Genome Data Viewer
    Location:
    X; X A6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (56133466..56151900)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (57088106..57106540)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (54341283..54358623)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene bombesin-like receptor 3 Neighboring gene HIV TAT specific factor 1 Neighboring gene predicted gene 14718 Neighboring gene CD40 ligand

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein C-terminus binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    transcription cofactor vestigial-like protein 1
    Names
    vestigial like 1 homolog
    vestigial-related factor
    vgl-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001313763.1NP_001300692.1  transcription cofactor vestigial-like protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
      Source sequence(s)
      AL672128
      Consensus CDS
      CCDS30151.1
      UniProtKB/Swiss-Prot
      Q99NC0
      Related
      ENSMUSP00000110393.3, ENSMUST00000114745.9
      Conserved Domains (1) summary
      pfam07545
      Location:2151
      Vg_Tdu; Vestigial/Tondu family
    2. NM_133251.2NP_573514.1  transcription cofactor vestigial-like protein 1

      See identical proteins and their annotated locations for NP_573514.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
      Source sequence(s)
      AL672128
      Consensus CDS
      CCDS30151.1
      UniProtKB/Swiss-Prot
      Q99NC0
      Related
      ENSMUSP00000033465.4, ENSMUST00000033465.10
      Conserved Domains (1) summary
      pfam07545
      Location:2151
      Vg_Tdu; Vestigial/Tondu family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      56133466..56151900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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