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    Krcc1 lysine-rich coiled-coil 1 [ Mus musculus (house mouse) ]

    Gene ID: 57896, updated on 5-Mar-2024

    Summary

    Official Symbol
    Krcc1provided by MGI
    Official Full Name
    lysine-rich coiled-coil 1provided by MGI
    Primary source
    MGI:MGI:1889377
    See related
    Ensembl:ENSMUSG00000053012 AllianceGenome:MGI:1889377
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human KRCC1 (lysine rich coiled-coil 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in bladder adult (RPKM 17.2), placenta adult (RPKM 12.1) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    Location:
    6 C1; 6 32.14 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (71248661..71263809)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (71271677..71286825)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene fatty acid binding protein 1, liver Neighboring gene SET and MYND domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_16258 Neighboring gene STARR-seq mESC enhancer starr_16259 Neighboring gene microRNA 8112 Neighboring gene STARR-seq mESC enhancer starr_16261 Neighboring gene predicted gene 1070 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:71266617-71266800 Neighboring gene predicted gene, 38828

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    lysine-rich coiled-coil protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001354706.1NP_001341635.1  lysine-rich coiled-coil protein 1

      Status: VALIDATED

      Source sequence(s)
      AC160090, AK146818, AW912446
      Consensus CDS
      CCDS20228.1
      UniProtKB/Swiss-Prot
      Q99JT5
      UniProtKB/TrEMBL
      Q8BWL9
      Related
      ENSMUSP00000145416.2, ENSMUST00000204436.3
      Conserved Domains (1) summary
      pfam10243
      Location:146236
      MIP-T3; Microtubule-binding protein MIP-T3
    2. NM_145568.4NP_663543.1  lysine-rich coiled-coil protein 1

      See identical proteins and their annotated locations for NP_663543.1

      Status: VALIDATED

      Source sequence(s)
      AC160090, AW912446, BC069863
      Consensus CDS
      CCDS20228.1
      UniProtKB/Swiss-Prot
      Q99JT5
      UniProtKB/TrEMBL
      Q8BWL9
      Related
      ENSMUSP00000130252.2, ENSMUST00000168700.7
      Conserved Domains (1) summary
      pfam10243
      Location:146236
      MIP-T3; Microtubule-binding protein MIP-T3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      71248661..71263809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)